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    NIF3L1 NGG1 interacting factor 3 like 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 509473, updated on 27-Dec-2024

    Summary

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    Official Symbol
    NIF3L1provided by VGNC
    Official Full Name
    NGG1 interacting factor 3 like 1provided by VGNC
    Primary source
    VGNC:VGNC:32075
    See related
    BGD:BT24736; Ensembl:ENSBTAG00000018282
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See NIF3L1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (89530588..89550470)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene CDC like kinase 1 Neighboring gene peptidylprolyl isomerase like 3 Neighboring gene uncharacterized LOC132343176 Neighboring gene origin recognition complex subunit 2 Neighboring gene hyccin PI4KA lipid kinase complex subunit 2 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC139495

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NIF3-like protein 1
    Names
    GTP cyclohydrolase I
    NIF3 NGG1 interacting factor 3-like 1
    putative GTP cyclohydrolase 1 type 2 NIF3L1
    NP_001073718.1
    XP_005202674.1
    XP_024856112.1
    XP_059748737.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080249.2 → NP_001073718.1  NIF3-like protein 1

      See identical proteins and their annotated locations for NP_001073718.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122596
      UniProtKB/Swiss-Prot
      Q05B89
      UniProtKB/TrEMBL
      A0A3Q1LG04
      Related
      ENSBTAP00000024331.4, ENSBTAT00000024331.5
      Conserved Domains (1) summary
      pfam01784
      Location:33 → 354
      NIF3; NIF3 (NGG1p interacting factor 3)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      89530588..89550470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025000344.2 → XP_024856112.1  NIF3-like protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q05B89
      UniProtKB/TrEMBL
      A0A3Q1LG04
      Conserved Domains (1) summary
      pfam01784
      Location:33 → 354
      NIF3; NIF3 (NGG1p interacting factor 3)

    2. XM_005202617.5 → XP_005202674.1  NIF3-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005202674.1

      UniProtKB/Swiss-Prot
      Q05B89
      UniProtKB/TrEMBL
      A0A3Q1LG04
      Conserved Domains (1) summary
      pfam01784
      Location:33 → 354
      NIF3; NIF3 (NGG1p interacting factor 3)

    3. XM_059892754.1 → XP_059748737.1  NIF3-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9SWN3
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q05B89.1 GenPept UniProtKB/Swiss-Prot:Q05B89

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