U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein [ Bos taurus (domestic cattle) ]

    Gene ID: 511763, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SYNCRIPprovided by VGNC
    Official Full Name
    synaptotagmin binding cytoplasmic RNA interacting proteinprovided by VGNC
    Primary source
    VGNC:VGNC:35518
    See related
    BGD:BT28236; Ensembl:ENSBTAG00000006672
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SYNCRIP in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (63818965..63849559)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100174924 Neighboring gene small nucleolar RNA SNORD50 Neighboring gene small nucleolar RNA SNORD50 Neighboring gene sorting nexin 14 Neighboring gene 5'-nucleotidase ecto

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 5'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CRD-mediated mRNA stabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CRD-mediated mRNA stability complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    heterogeneous nuclear ribonucleoprotein Q

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      63818965..63849559
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005210908.5 → XP_005210965.1  heterogeneous nuclear ribonucleoprotein Q isoform X1

      See identical proteins and their annotated locations for XP_005210965.1

      UniProtKB/TrEMBL
      A0A3Q1M326
      Related
      ENSBTAP00000067867.1, ENSBTAT00000086528.2
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 615
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    2. XM_024996982.2 → XP_024852750.1  heterogeneous nuclear ribonucleoprotein Q isoform X3

      UniProtKB/TrEMBL
      A0AAA9SYW9
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 553
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    3. XM_024996981.2 → XP_024852749.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

      UniProtKB/TrEMBL
      A0AAA9SYW9, F1MCT8
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 557
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    4. XM_002690201.7 → XP_002690247.2  heterogeneous nuclear ribonucleoprotein Q isoform X1

      See identical proteins and their annotated locations for XP_002690247.2

      UniProtKB/TrEMBL
      A0A3Q1M326
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 615
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    5. XM_002690202.7 → XP_002690248.2  heterogeneous nuclear ribonucleoprotein Q isoform X2

      See identical proteins and their annotated locations for XP_002690248.2

      UniProtKB/TrEMBL
      A0AAA9SYW9, F1MCT8
      Related
      ENSBTAP00000008774.6, ENSBTAT00000008774.7
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 557
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    6. XM_005210907.5 → XP_005210964.1  heterogeneous nuclear ribonucleoprotein Q isoform X3

      See identical proteins and their annotated locations for XP_005210964.1

      UniProtKB/TrEMBL
      A0AAA9SYW9
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 553
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    7. XM_010808536.4 → XP_010806838.1  heterogeneous nuclear ribonucleoprotein Q isoform X5

      See identical proteins and their annotated locations for XP_010806838.1

      UniProtKB/TrEMBL
      A0A3Q1M326
      Conserved Domains (2) summary
      TIGR01648
      Location:103 → 501
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21066
      Location:23 → 107
      NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

    8. XM_005210909.5 → XP_005210966.1  heterogeneous nuclear ribonucleoprotein Q isoform X4

      See identical proteins and their annotated locations for XP_005210966.1

      UniProtKB/TrEMBL
      A0A3Q1M326
      Conserved Domains (1) summary
      TIGR01648
      Location:5 → 517
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    9. XM_024996983.2 → XP_024852751.1  heterogeneous nuclear ribonucleoprotein Q isoform X6

      Conserved Domains (1) summary
      TIGR01648
      Location:5 → 459
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials