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    TAF2 TATA-box binding protein associated factor 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 781912, updated on 30-Jan-2025

    Summary

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    Official Symbol
    TAF2provided by VGNC
    Official Full Name
    TATA-box binding protein associated factor 2provided by VGNC
    Primary source
    VGNC:VGNC:35573
    See related
    BGD:BT26999; EnsemblRapid:ENSBTAG00070018311
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TAF2 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 14 NC_037341.1 (81173269..81261587, complement)

    Chromosome 14 - NC_037341.1Genomic Context describing neighboring genes Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 2 Neighboring gene microRNA mir-2285n-6 Neighboring gene uncharacterized LOC104974144 Neighboring gene DNA replication and sister chromatid cohesion 1 Neighboring gene DEP domain containing MTOR interacting protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037341.1 Chromosome 14 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC166014

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 2
    Names
    TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191141.1 → NP_001178070.1  transcription initiation factor TFIID subunit 2

      Status: VALIDATED

      Source sequence(s)
      DN550237, DV801475, DV888470, EE379240, EE388434, EH173507, EH174640, EH206987, EH374811, NKLS02000014
      UniProtKB/TrEMBL
      A0A3Q1MUH2, A0AAA9T4Y9
      Related
      ENSBTAP00070025333.1, ENSBTAT00070042417.1
      Conserved Domains (2) summary
      cd09839
      Location:27 → 541
      M1_TAF2; TATA binding protein (TBP) associated factor 2
      pfam13646
      Location:652 → 705
      HEAT_2; HEAT repeats

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037341.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      81173269..81261587 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059874302.1 → XP_059730285.1  transcription initiation factor TFIID subunit 2 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1MUH2, A0AAA9T4Y9

    2. XM_059874301.1 → XP_059730284.1  transcription initiation factor TFIID subunit 2 isoform X3

      UniProtKB/TrEMBL
      A0AAA9T4Y9

    3. XM_059874300.1 → XP_059730283.1  transcription initiation factor TFIID subunit 2 isoform X2

      UniProtKB/TrEMBL
      A0AAA9SW98, F1MME0
      Related
      ENSBTAP00070025309.1, ENSBTAT00070042381.1

    4. XM_059874299.1 → XP_059730282.1  transcription initiation factor TFIID subunit 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SW98

    5. XM_059874304.1 → XP_059730287.1  transcription initiation factor TFIID subunit 2 isoform X8

    6. XM_059874303.1 → XP_059730286.1  transcription initiation factor TFIID subunit 2 isoform X6

    7. XM_025001788.2 → XP_024857556.1  transcription initiation factor TFIID subunit 2 isoform X5

      Conserved Domains (2) summary
      pfam13646
      Location:454 → 507
      HEAT_2; HEAT repeats
      cl14813
      Location:67 → 343
      GluZincin; Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins)

    8. XM_025001790.2 → XP_024857558.1  transcription initiation factor TFIID subunit 2 isoform X7

      UniProtKB/TrEMBL
      A0AAA9SW98
      Conserved Domains (2) summary
      pfam13646
      Location:441 → 494
      HEAT_2; HEAT repeats
      cl14813
      Location:1 → 330
      GluZincin; Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins)
    Nucleotide Protein Strain
    Heading Accession and Version

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