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    ARMC6 armadillo repeat containing 6 [ Bos taurus (domestic cattle) ]

    Gene ID: 514111, updated on 30-Jan-2025

    Summary

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    Official Symbol
    ARMC6provided by VGNC
    Official Full Name
    armadillo repeat containing 6provided by VGNC
    Primary source
    VGNC:VGNC:26160
    See related
    BGD:BT16108; EnsemblRapid:ENSBTAG00070006027
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ARMC6 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (4167876..4183807, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345672 Neighboring gene transmembrane protein 161A Neighboring gene solute carrier family 25 member 42 Neighboring gene SURP and G-patch domain containing 2 Neighboring gene homer scaffold protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC159992

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hematopoietic progenitor cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    armadillo repeat-containing protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098966.1 → NP_001092436.1  armadillo repeat-containing protein 6

      Status: PROVISIONAL

      Source sequence(s)
      BC146081
      UniProtKB/TrEMBL
      A0A3Q1NCV1, A6H718
      Related
      ENSBTAP00070008031.1, ENSBTAT00070013810.1
      Conserved Domains (3) summary
      cd00020
      Location:286 → 410
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam13764
      Location:28 → 202
      E3_UbLigase_R4; E3 ubiquitin-protein ligase UBR4
      sd00043
      Location:288 → 321
      ARM; armadillo repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      4167876..4183807 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024994181.2 → XP_024849949.1  armadillo repeat-containing protein 6 isoform X1

      UniProtKB/TrEMBL
      F6PR59
      Conserved Domains (3) summary
      smart00185
      Location:184 → 226
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:244 → 278
      ARM; armadillo repeat [structural motif]
      pfam13764
      Location:28 → 128
      E3_UbLigase_R4; E3 ubiquitin-protein ligase UBR4

    2. XM_015471866.3 → XP_015327352.1  armadillo repeat-containing protein 6 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1NCV1, A6H718
      Related
      ENSBTAP00070008046.1, ENSBTAT00070013826.1
      Conserved Domains (3) summary
      cd00020
      Location:286 → 410
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam13764
      Location:28 → 202
      E3_UbLigase_R4; E3 ubiquitin-protein ligase UBR4
      sd00043
      Location:288 → 321
      ARM; armadillo repeat [structural motif]

    3. XM_024994187.2 → XP_024849955.1  armadillo repeat-containing protein 6 isoform X1

      UniProtKB/TrEMBL
      F6PR59
      Conserved Domains (3) summary
      smart00185
      Location:184 → 226
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:244 → 278
      ARM; armadillo repeat [structural motif]
      pfam13764
      Location:28 → 128
      E3_UbLigase_R4; E3 ubiquitin-protein ligase UBR4

    4. XM_059888132.1 → XP_059744115.1  armadillo repeat-containing protein 6 isoform X1

      UniProtKB/TrEMBL
      F6PR59

    5. XM_024994183.2 → XP_024849951.1  armadillo repeat-containing protein 6 isoform X1

      UniProtKB/TrEMBL
      F6PR59
      Conserved Domains (3) summary
      smart00185
      Location:184 → 226
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:244 → 278
      ARM; armadillo repeat [structural motif]
      pfam13764
      Location:28 → 128
      E3_UbLigase_R4; E3 ubiquitin-protein ligase UBR4

    6. XM_024994182.2 → XP_024849950.1  armadillo repeat-containing protein 6 isoform X1

      UniProtKB/TrEMBL
      F6PR59
      Conserved Domains (3) summary
      smart00185
      Location:184 → 226
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:244 → 278
      ARM; armadillo repeat [structural motif]
      pfam13764
      Location:28 → 128
      E3_UbLigase_R4; E3 ubiquitin-protein ligase UBR4

    7. XM_059888131.1 → XP_059744114.1  armadillo repeat-containing protein 6 isoform X1

      UniProtKB/TrEMBL
      F6PR59

    8. XM_059888133.1 → XP_059744116.1  armadillo repeat-containing protein 6 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1NCV1, A6H718

    9. XM_024994188.2 → XP_024849956.1  armadillo repeat-containing protein 6 isoform X2

      UniProtKB/TrEMBL
      F6PR59
      Conserved Domains (2) summary
      smart00185
      Location:157 → 199
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:217 → 251
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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