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    SVBP small vasohibin binding protein [ Bos taurus (domestic cattle) ]

    Gene ID: 614073, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SVBPprovided by VGNC
    Official Full Name
    small vasohibin binding proteinprovided by VGNC
    Primary source
    VGNC:VGNC:35497
    See related
    BGD:BT14655; Ensembl:ENSBTAG00000017388
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    CCDC23
    Orthologs
    human mouse all
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    Genomic context

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    See SVBP in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (103432228..103438945)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 691 Neighboring gene erythroblast membrane associated protein (Scianna blood group) Neighboring gene peroxiredoxin-1-like Neighboring gene transmembrane protein 269 Neighboring gene uncharacterized LOC132344930 Neighboring gene chromosome 3 C1orf50 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC133534

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apical part of cell IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small vasohibin-binding protein
    Names
    coiled-coil domain containing 23
    coiled-coil domain-containing protein 23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040575.1 → NP_001035665.1  small vasohibin-binding protein

      See identical proteins and their annotated locations for NP_001035665.1

      Status: PROVISIONAL

      Source sequence(s)
      BC109552
      UniProtKB/Swiss-Prot
      Q32LJ0
      Related
      ENSBTAP00000040566.2, ENSBTAT00000042962.3
      Conserved Domains (1) summary
      pfam15674
      Location:6 → 62
      CCDC23; Coiled-coil domain-containing protein 23

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      103432228..103438945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005204847.3 → XP_005204904.1  small vasohibin-binding protein isoform X1

      See identical proteins and their annotated locations for XP_005204904.1

      UniProtKB/Swiss-Prot
      Q32LJ0
      Conserved Domains (1) summary
      pfam15674
      Location:6 → 62
      CCDC23; Coiled-coil domain-containing protein 23

    2. XM_005204849.5 → XP_005204906.1  small vasohibin-binding protein isoform X1

      See identical proteins and their annotated locations for XP_005204906.1

      UniProtKB/Swiss-Prot
      Q32LJ0
      Conserved Domains (1) summary
      pfam15674
      Location:6 → 62
      CCDC23; Coiled-coil domain-containing protein 23

    3. XM_059884846.1 → XP_059740829.1  small vasohibin-binding protein isoform X1

      UniProtKB/Swiss-Prot
      Q32LJ0

    4. XM_059884844.1 → XP_059740827.1  small vasohibin-binding protein isoform X1

      UniProtKB/Swiss-Prot
      Q32LJ0

    5. XM_059884845.1 → XP_059740828.1  small vasohibin-binding protein isoform X1

      UniProtKB/Swiss-Prot
      Q32LJ0
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q32LJ0.1 GenPept UniProtKB/Swiss-Prot:Q32LJ0

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