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    LTN1 listerin E3 ubiquitin protein ligase 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 519526, updated on 27-Dec-2024

    Summary

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    Official Symbol
    LTN1provided by VGNC
    Official Full Name
    listerin E3 ubiquitin protein ligase 1provided by VGNC
    Primary source
    VGNC:VGNC:31078
    See related
    BGD:BT13680; Ensembl:ENSBTAG00000000201
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    RNF160; ZNF294
    Orthologs
    human mouse all
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    Genomic context

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    See LTN1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (7183913..7242830)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene chaperonin containing TCP1 subunit 8 Neighboring gene ubiquitin specific peptidase 16 Neighboring gene RWD domain containing 2B Neighboring gene histone H2B type 2-K1 Neighboring gene N-6 adenine-specific DNA methyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ribosomal large subunit binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rescue of stalled ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosome-associated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RQC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase listerin
    Names
    ring finger protein 160
    zinc finger protein 294
    NP_001179438.2
    XP_024845160.1
    XP_059740540.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192509.2 → NP_001179438.2  E3 ubiquitin-protein ligase listerin

      Status: VALIDATED

      Source sequence(s)
      AAFC03034354, AAFC03034355, AAFC03059735
      UniProtKB/TrEMBL
      A0AAA9T6C5
      Related
      ENSBTAP00000032364.6, ENSBTAT00000032432.6
      Conserved Domains (1) summary
      pfam13639
      Location:1713 → 1762
      zf-RING_2; Ring finger domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      7183913..7242830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059884557.1 → XP_059740540.1  E3 ubiquitin-protein ligase listerin isoform X2

      UniProtKB/TrEMBL
      A0AAA9T6C5

    2. XM_024989392.2 → XP_024845160.1  E3 ubiquitin-protein ligase listerin isoform X1

      UniProtKB/TrEMBL
      A0AAA9T6C5
      Conserved Domains (1) summary
      COG5219
      Location:1278 → 1566
      COG5219; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    Nucleotide Protein Strain
    Heading Accession and Version

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