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    HEPACAM2 HEPACAM family member 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 513430, updated on 1-Jan-2025

    Summary

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    Official Symbol
    HEPACAM2provided by VGNC
    Official Full Name
    HEPACAM family member 2provided by VGNC
    Primary source
    VGNC:VGNC:29811
    See related
    BGD:BT20808; Ensembl:ENSBTAG00000012456
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See HEPACAM2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (10540867..10600689, complement)

    Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112446530 Neighboring gene sterile alpha motif domain containing 9 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like Neighboring gene VPS50 subunit of EARP/GARPII complex Neighboring gene calcitonin receptor Neighboring gene microRNA mir-653

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC159765

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in centrosome cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in midbody IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in spindle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HEPACAM family member 2
    Names
    mitotic kinetics regulator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101974.1 → NP_001095444.1  HEPACAM family member 2 precursor

      Status: PROVISIONAL

      Source sequence(s)
      BC149765
      UniProtKB/Swiss-Prot
      A6QQC6
      UniProtKB/TrEMBL
      A0AAF6YXV0
      Conserved Domains (3) summary
      smart00408
      Location:155 → 214
      IGc2; Immunoglobulin C-2 Type
      pfam07679
      Location:137 → 220
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:25 → 130
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      10540867..10600689 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024990633.2 → XP_024846401.1  HEPACAM family member 2 isoform X7

      Conserved Domains (1) summary
      pfam13927
      Location:73 → 148
      Ig_3; Immunoglobulin domain

    2. XM_015468103.3 → XP_015323589.1  HEPACAM family member 2 isoform X7

      Conserved Domains (1) summary
      pfam13927
      Location:73 → 148
      Ig_3; Immunoglobulin domain

    3. XM_059885542.1 → XP_059741525.1  HEPACAM family member 2 isoform X4

      UniProtKB/TrEMBL
      A0AAF6YXV0

    4. XM_024990630.2 → XP_024846398.2  HEPACAM family member 2 isoform X1

      UniProtKB/TrEMBL
      A0AAF6YXV0
      Related
      ENSBTAP00000016529.5, ENSBTAT00000016529.6

    5. XM_005205140.5 → XP_005205197.1  HEPACAM family member 2 isoform X3

      UniProtKB/TrEMBL
      A0AAF6YXV0
      Conserved Domains (3) summary
      smart00408
      Location:167 → 226
      IGc2; Immunoglobulin C-2 Type
      pfam07679
      Location:149 → 232
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:37 → 142
      Ig; Immunoglobulin domain

    6. XM_005205139.5 → XP_005205196.1  HEPACAM family member 2 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LGE3, A0AAF6YXV0
      Related
      ENSBTAP00000057487.2, ENSBTAT00000078463.2
      Conserved Domains (3) summary
      smart00408
      Location:168 → 227
      IGc2; Immunoglobulin C-2 Type
      pfam07679
      Location:150 → 233
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:38 → 143
      Ig; Immunoglobulin domain

    7. XM_059885543.1 → XP_059741526.1  HEPACAM family member 2 isoform X5

      UniProtKB/TrEMBL
      A0AAF6YXV0

    8. XM_005205142.5 → XP_005205199.1  HEPACAM family member 2 isoform X6

      UniProtKB/TrEMBL
      A0AAF6YXV0
      Conserved Domains (3) summary
      smart00408
      Location:167 → 226
      IGc2; Immunoglobulin C-2 Type
      pfam07679
      Location:149 → 232
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:37 → 142
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QQC6.1 GenPept UniProtKB/Swiss-Prot:A6QQC6

    Gene LinkOut

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    Research Materials