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    ELF1 E74 like ETS transcription factor 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 505251, updated on 30-Jan-2025

    Summary

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    Official Symbol
    ELF1provided by VGNC
    Official Full Name
    E74 like ETS transcription factor 1provided by VGNC
    Primary source
    VGNC:VGNC:28426
    See related
    EnsemblRapid:ENSBTAG00070025700
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ELF1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 12 NC_037339.1 (11154017..11276991, complement)

    Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene chondromodulin Neighboring gene SGT1 homolog, MIS12 kinetochore complex assembly cochaperone Neighboring gene uncharacterized LOC132346739 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene molybdopterin synthase sulfur carrier subunit Neighboring gene uncharacterized LOC112449170 Neighboring gene microRNA mir-12044 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene WW domain binding protein 4 Neighboring gene kelch repeat and BTB domain containing 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037339.1 Chromosome 12 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC139879

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ETS-related transcription factor Elf-1
    Names
    E74-like factor 1 (ets domain transcription factor)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077853.1 → NP_001071321.1  ETS-related transcription factor Elf-1

      See identical proteins and their annotated locations for NP_001071321.1

      Status: PROVISIONAL

      Source sequence(s)
      BC126517
      UniProtKB/Swiss-Prot
      A0JN51
      Related
      ENSBTAP00070034631.1, ENSBTAT00070058208.1
      Conserved Domains (2) summary
      smart00413
      Location:207 → 289
      ETS; erythroblast transformation specific domain
      pfam12310
      Location:2 → 111
      Elf-1_N; Transcription factor protein N terminal

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037339.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      11154017..11276991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059891971.1 → XP_059747954.1  ETS-related transcription factor Elf-1 isoform X1

      UniProtKB/Swiss-Prot
      A0JN51

    2. XM_059891974.1 → XP_059747957.1  ETS-related transcription factor Elf-1 isoform X1

      UniProtKB/Swiss-Prot
      A0JN51

    3. XM_059891972.1 → XP_059747955.1  ETS-related transcription factor Elf-1 isoform X1

      UniProtKB/Swiss-Prot
      A0JN51

    4. XM_059891973.1 → XP_059747956.1  ETS-related transcription factor Elf-1 isoform X1

      UniProtKB/Swiss-Prot
      A0JN51

    5. XM_015473755.3 → XP_015329241.1  ETS-related transcription factor Elf-1 isoform X3

      Conserved Domains (2) summary
      pfam00178
      Location:151 → 230
      Ets; Ets-domain
      pfam12310
      Location:1 → 52
      Elf-1_N; Transcription factor protein N terminal

    6. XM_005213568.5 → XP_005213625.1  ETS-related transcription factor Elf-1 isoform X2

      Conserved Domains (2) summary
      pfam00178
      Location:209 → 288
      Ets; Ets-domain
      pfam12310
      Location:2 → 110
      Elf-1_N; Transcription factor protein N terminal

    7. XM_059891975.1 → XP_059747958.1  ETS-related transcription factor Elf-1 isoform X1

      UniProtKB/Swiss-Prot
      A0JN51

    8. XM_059891976.1 → XP_059747959.1  ETS-related transcription factor Elf-1 isoform X1

      UniProtKB/Swiss-Prot
      A0JN51

    9. XM_005213567.5 → XP_005213624.1  ETS-related transcription factor Elf-1 isoform X1

      See identical proteins and their annotated locations for XP_005213624.1

      UniProtKB/Swiss-Prot
      A0JN51
      Conserved Domains (2) summary
      smart00413
      Location:207 → 289
      ETS; erythroblast transformation specific domain
      pfam12310
      Location:2 → 111
      Elf-1_N; Transcription factor protein N terminal

    10. XM_024999787.2 → XP_024855555.1  ETS-related transcription factor Elf-1 isoform X1

      UniProtKB/Swiss-Prot
      A0JN51
      Conserved Domains (2) summary
      smart00413
      Location:207 → 289
      ETS; erythroblast transformation specific domain
      pfam12310
      Location:2 → 111
      Elf-1_N; Transcription factor protein N terminal
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0JN51.1 GenPept UniProtKB/Swiss-Prot:A0JN51

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