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    HMGN3 high mobility group nucleosomal binding domain 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 515652, updated on 27-Dec-2024

    Summary

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    Official Symbol
    HMGN3provided by VGNC
    Official Full Name
    high mobility group nucleosomal binding domain 3provided by VGNC
    Primary source
    VGNC:VGNC:49985
    See related
    BGD:BT15407; Ensembl:ENSBTAG00000055765
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See HMGN3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (18779304..18814789, complement)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101903793 Neighboring gene uncharacterized LOC132346202 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene lebercilin LCA5 Neighboring gene SH3 domain binding glutamate rich protein like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128425

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleosomal DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    high mobility group nucleosome-binding domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034504.2 → NP_001029676.1  high mobility group nucleosome-binding domain-containing protein 3

      See identical proteins and their annotated locations for NP_001029676.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103089
      UniProtKB/Swiss-Prot
      Q3ZBV4
      Related
      ENSBTAP00000092250.1, ENSBTAT00000112584.1
      Conserved Domains (1) summary
      smart00527
      Location:2 → 95
      HMG17; domain in high mobilty group proteins HMG14 and HMG 17

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      18779304..18814789 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024996559.2 → XP_024852327.1  high mobility group nucleosome-binding domain-containing protein 3 isoform X5

      Conserved Domains (1) summary
      smart00527
      Location:3 → 78
      HMG17; domain in high mobilty group proteins HMG14 and HMG 17

    2. XM_005210685.5 → XP_005210742.1  high mobility group nucleosome-binding domain-containing protein 3 isoform X2

      See identical proteins and their annotated locations for XP_005210742.1

      Related
      ENSBTAP00000078836.1, ENSBTAT00000135096.1
      Conserved Domains (1) summary
      pfam01101
      Location:1 → 97
      HMG14_17; HMG14 and HMG17

    3. XM_024996558.2 → XP_024852326.1  high mobility group nucleosome-binding domain-containing protein 3 isoform X3

      Conserved Domains (1) summary
      pfam01101
      Location:1 → 80
      HMG14_17; HMG14 and HMG17

    4. XM_005210684.5 → XP_005210741.1  high mobility group nucleosome-binding domain-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_005210741.1

      Conserved Domains (1) summary
      pfam01101
      Location:1 → 97
      HMG14_17; HMG14 and HMG17

    5. XM_059889656.1 → XP_059745639.1  high mobility group nucleosome-binding domain-containing protein 3 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ZBV4.1 GenPept UniProtKB/Swiss-Prot:Q3ZBV4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials