U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SS18 SS18 subunit of BAF chromatin remodeling complex [ Bos taurus (domestic cattle) ]

    Gene ID: 540947, updated on 1-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    SS18provided by VGNC
    Official Full Name
    SS18 subunit of BAF chromatin remodeling complexprovided by VGNC
    Primary source
    VGNC:VGNC:35305
    See related
    BGD:BT12318; Ensembl:ENSBTAG00000011531
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SS18 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 24 NC_037351.1 (30669797..30746233)

    Chromosome 24 - NC_037351.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 4b Neighboring gene proteasome 20S subunit alpha 8 Neighboring gene microRNA mir-2380 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene zinc finger protein 521 Neighboring gene microRNA mir-378c

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037351.1 Chromosome 24 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC138909

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein SSXT
    Names
    SS18, nBAF chromatin remodeling complex subunit

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098122.1 → NP_001091591.1  protein SSXT

      See identical proteins and their annotated locations for NP_001091591.1

      Status: PROVISIONAL

      Source sequence(s)
      BC140481
      UniProtKB/TrEMBL
      A0A3Q1MGC9, A5D7A1, F1MLY4
      Related
      ENSBTAP00000015327.5, ENSBTAT00000015327.7
      Conserved Domains (1) summary
      pfam05030
      Location:14 → 73
      SSXT; SSXT protein (N-terminal region)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037351.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      30669797..30746233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005224072.5 → XP_005224129.1  protein SSXT isoform X2

      See identical proteins and their annotated locations for XP_005224129.1

      UniProtKB/TrEMBL
      A0A3Q1MGC9
      Conserved Domains (1) summary
      pfam05030
      Location:1 → 50
      SSXT; SSXT protein (N-terminal region)

    2. XM_005224073.4 → XP_005224130.1  protein SSXT isoform X2

      See identical proteins and their annotated locations for XP_005224130.1

      UniProtKB/TrEMBL
      A0A3Q1MGC9
      Related
      ENSBTAP00000070233.2, ENSBTAT00000066998.2
      Conserved Domains (1) summary
      pfam05030
      Location:1 → 50
      SSXT; SSXT protein (N-terminal region)

    3. XM_059880977.1 → XP_059736960.1  protein SSXT isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MGC9

    4. XM_005224075.5 → XP_005224132.1  protein SSXT isoform X1

      See identical proteins and their annotated locations for XP_005224132.1

      UniProtKB/TrEMBL
      A0A3Q1MG44, A0A3Q1MGC9
      Related
      ENSBTAP00000070130.1, ENSBTAT00000071890.2
      Conserved Domains (1) summary
      pfam05030
      Location:14 → 73
      SSXT; SSXT protein (N-terminal region)

    5. XM_024984383.2 → XP_024840151.1  protein SSXT isoform X5

      Conserved Domains (2) summary
      pfam05030
      Location:14 → 73
      SSXT; SSXT protein (N-terminal region)
      cl25887
      Location:163 → 268
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    6. XM_059880976.1 → XP_059736959.1  protein SSXT isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MGC9

    7. XM_059880978.1 → XP_059736961.1  protein SSXT isoform X4

      UniProtKB/TrEMBL
      A0A3Q1MGC9
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials