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    CG5348 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 36877, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5348provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034156
    Locus tag
    Dmel_CG5348
    See related
    AllianceGenome:FB:FBgn0034156
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5348
    Summary
    Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in intracellular calcium ion homeostasis and monoatomic cation transport. Predicted to be active in membrane. Orthologous to human SLC8B1 (solute carrier family 8 member B1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5348 in Genome Data Viewer
    Location:
    53D7-53D7; 2-80 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (16766804..16769238)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (12654309..12656743)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncoordinated-104 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Superoxide dismutase 2 (Mn) Neighboring gene Actin-related protein 53D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The sexual identity of adult intestinal stem cells controls organ size and plasticity. Hudry B, et al. Nature, 2016 Feb 18. PMID 26887495, Free PMC Article
    2. New genes often acquire male-specific functions but rarely become essential in Drosophila. Kondo S, et al. Genes Dev, 2017 Sep 15. PMID 29051389, Free PMC Article
    3. A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. Neely GG, et al. Cell, 2010 Apr 2. PMID 20371351, Free PMC Article
    4. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article
    5. Systematic genetic analysis of muscle morphogenesis and function in Drosophila. Schnorrer F, et al. Nature, 2010 Mar 11. PMID 20220848

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables calcium:sodium antiporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular calcium ion homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in monoatomic cation transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5348-PB
    CG5348-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      16766804..16769238
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001259446.2 → NP_001246375.1  uncharacterized protein Dmel_CG5348, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246375.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4K889
      Conserved Domains (1) summary
      pfam01699
      Location:86 → 186
      Na_Ca_ex; Sodium/calcium exchanger protein

    2. NM_137312.4 → NP_611156.3  uncharacterized protein Dmel_CG5348, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611156.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1ZAJ4
      Conserved Domains (1) summary
      pfam01699
      Location:458 → 603
      Na_Ca_ex; Sodium/calcium exchanger protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4K889 A0A0B4K889
    A1ZAJ4 A1ZAJ4

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