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    CG5819 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37547, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5819provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034717
    Locus tag
    Dmel_CG5819
    See related
    AllianceGenome:FB:FBgn0034717
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    5819; CT18212; Dmel\CG5819; tartan/capricious-like
    Summary
    Is expressed in several structures, including Malpighian tubule primordium; adult head; embryonic/larval midgut primordium; gut section; and proventriculus primordium. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5819 in Genome Data Viewer
    Location:
    58D3-58D3; 2-99 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (22293400..22296955)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (18180905..18184460)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene defective proventriculus Neighboring gene long non-coding RNA:CR43422 Neighboring gene windpipe Neighboring gene long non-coding RNA:CR44758

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A deletion-generator compound element allows deletion saturation analysis for genomewide phenotypic annotation. Huet F, et al. Proc Natl Acad Sci U S A, 2002 Jul 23. PMID 12096187, Free PMC Article
    2. Systematic imaging reveals features and changing localization of mRNAs in Drosophila development. Jambor H, et al. Elife, 2015 Apr 2. PMID 25838129, Free PMC Article
    3. An extracellular interactome of immunoglobulin and LRR proteins reveals receptor-ligand networks. Özkan E, et al. Cell, 2013 Jul 3. PMID 23827685, Free PMC Article
    4. Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet. Çiçek IÖ, et al. Genetics, 2016 Mar. PMID 26801178, Free PMC Article
    5. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5819-PA
    CG5819-PB
    CG5819-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      22293400..22296955
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001259529.2 → NP_001246458.1  uncharacterized protein Dmel_CG5819, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246458.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7JWP9
      Conserved Domains (4) summary
      smart00082
      Location:471 → 517
      LRRCT; Leucine rich repeat C-terminal domain
      cd00116
      Location:58 → 236
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:204 → 227
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:273 → 333
      LRR_8; Leucine rich repeat

    2. NM_166523.3 → NP_726186.1  uncharacterized protein Dmel_CG5819, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_726186.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7JWP9
      Related
      FBpp0071725
      Conserved Domains (4) summary
      smart00082
      Location:471 → 517
      LRRCT; Leucine rich repeat C-terminal domain
      cd00116
      Location:58 → 236
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:204 → 227
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:273 → 333
      LRR_8; Leucine rich repeat

    3. NM_137816.2 → NP_611660.1  uncharacterized protein Dmel_CG5819, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611660.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7JWP9
      Related
      FBpp0071724
      Conserved Domains (4) summary
      smart00082
      Location:471 → 517
      LRRCT; Leucine rich repeat C-terminal domain
      cd00116
      Location:58 → 236
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:204 → 227
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:273 → 333
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7JWP9 Q7JWP9

    Gene LinkOut

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