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    RPL12 ribosomal protein L12 [ Bos taurus (domestic cattle) ]

    Gene ID: 404133, updated on 27-Dec-2024

    Summary

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    Gene symbol
    RPL12
    Gene description
    ribosomal protein L12
    See related
    BGD:BT29784; Ensembl:ENSBTAG00000006963
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RPL12 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (98179657..98183818, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 8 Neighboring gene zinc finger protein 79 Neighboring gene small nucleolar RNA SNORA65 Neighboring gene leucine rich repeat and sterile alpha motif containing 1 Neighboring gene niban apoptosis regulator 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray. Ishiwata H, et al. Mol Reprod Dev, 2003 May. PMID 12658628
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables large ribosomal subunit rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein uL11
    Names
    60S ribosomal protein L12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205797.1 → NP_991366.1  large ribosomal subunit protein uL11

      See identical proteins and their annotated locations for NP_991366.1

      Status: PROVISIONAL

      Source sequence(s)
      AY528249
      UniProtKB/Swiss-Prot
      A5PJB1, P61284, Q3SZV1
      UniProtKB/TrEMBL
      F1MDX5
      Related
      ENSBTAP00000009152.2, ENSBTAT00000009152.3
      Conserved Domains (1) summary
      PLN03072
      Location:1 → 165
      PLN03072; 60S ribosomal protein L12; Provisional

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      98179657..98183818 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005213183.3 → XP_005213240.1  large ribosomal subunit protein uL11 isoform X1

      See identical proteins and their annotated locations for XP_005213240.1

      UniProtKB/TrEMBL
      F1MDX5
      Conserved Domains (2) summary
      cd00349
      Location:13 → 143
      Ribosomal_L11; Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal ...
      PLN03072
      Location:1 → 163
      PLN03072; 60S ribosomal protein L12; Provisional

    2. XM_059891045.1 → XP_059747028.1  large ribosomal subunit protein uL11 isoform X2

      UniProtKB/TrEMBL
      A0AAA9SAL8
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P61284.1 GenPept UniProtKB/Swiss-Prot:P61284

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