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    PAIP1 poly(A) binding protein interacting protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 510246, updated on 27-Dec-2024

    Summary

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    Gene symbol
    PAIP1
    Gene description
    poly(A) binding protein interacting protein 1
    See related
    BGD:BT18996; Ensembl:ENSBTAG00000020376
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PAIP1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 20 NC_037347.1 (31266388..31295059)

    Chromosome 20 - NC_037347.1Genomic Context describing neighboring genes Neighboring gene histone H2B type 1-C/E/F/G/I Neighboring gene nicotinamide nucleotide transhydrogenase Neighboring gene phosphoglycerate mutase 1-like Neighboring gene uncharacterized LOC132343229 Neighboring gene chromosome 20 C5orf34 homolog Neighboring gene transmembrane protein 267

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037347.1 Chromosome 20 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC160051

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyadenylate-binding protein-interacting protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001104971.1 → NP_001098441.1  polyadenylate-binding protein-interacting protein 1

      See identical proteins and their annotated locations for NP_001098441.1

      Status: PROVISIONAL

      Source sequence(s)
      BC142476
      UniProtKB/TrEMBL
      A0AAA9U1S3, A5PKG2
      Related
      ENSBTAP00000103813.1, ENSBTAT00000126299.1
      Conserved Domains (2) summary
      pfam02854
      Location:81 → 297
      MIF4G; MIF4G domain
      pfam07145
      Location:44 → 61
      PAM2; Ataxin-2 C-terminal region

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037347.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      31266388..31295059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005221532.5 → XP_005221589.1  polyadenylate-binding protein-interacting protein 1 isoform X2

      See identical proteins and their annotated locations for XP_005221589.1

      UniProtKB/TrEMBL
      A0AAA9U1S3
      Conserved Domains (2) summary
      pfam02854
      Location:48 → 264
      MIF4G; MIF4G domain
      pfam07145
      Location:11 → 28
      PAM2; Ataxin-2 C-terminal region

    2. XM_005221533.5 → XP_005221590.1  polyadenylate-binding protein-interacting protein 1 isoform X2

      See identical proteins and their annotated locations for XP_005221590.1

      UniProtKB/TrEMBL
      A0AAA9U1S3
      Conserved Domains (2) summary
      pfam02854
      Location:48 → 264
      MIF4G; MIF4G domain
      pfam07145
      Location:11 → 28
      PAM2; Ataxin-2 C-terminal region

    3. XM_005221531.4 → XP_005221588.1  polyadenylate-binding protein-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      F6RWP3
      Related
      ENSBTAP00000027160.5, ENSBTAT00000027160.6
      Conserved Domains (2) summary
      pfam02854
      Location:164 → 380
      MIF4G; MIF4G domain
      pfam09030
      Location:58 → 111
      Creb_binding; Creb binding
    Nucleotide Protein Strain
    Heading Accession and Version

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