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    TM4SF18 transmembrane 4 L six family member 18 [ Bos taurus (domestic cattle) ]

    Gene ID: 507280, updated on 27-Dec-2024

    Summary

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    Official Symbol
    TM4SF18provided by VGNC
    Official Full Name
    transmembrane 4 L six family member 18provided by VGNC
    Primary source
    VGNC:VGNC:35904
    See related
    BGD:BT12977; Ensembl:ENSBTAG00000019960
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human all
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    Genomic context

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    See TM4SF18 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (118859228..118883979)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132346270 Neighboring gene transmembrane 4 L six family member 1 Neighboring gene ceruloplasmin and hephaestin like 1 Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene ceruloplasmin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC126972

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane 4 L6 family member 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034287.2 → NP_001029459.1  transmembrane 4 L6 family member 18

      See identical proteins and their annotated locations for NP_001029459.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      BC102174, DY458735
      UniProtKB/Swiss-Prot
      Q3T110
      Conserved Domains (1) summary
      pfam05805
      Location:1 → 193
      L6_membrane; L6 membrane protein

    2. NM_001184724.1 → NP_001171653.1  transmembrane 4 L6 family member 18

      See identical proteins and their annotated locations for NP_001171653.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      BC102174, DV811364
      UniProtKB/Swiss-Prot
      Q3T110
      Related
      ENSBTAP00000026585.6, ENSBTAT00000026585.6
      Conserved Domains (1) summary
      pfam05805
      Location:1 → 193
      L6_membrane; L6 membrane protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      118859228..118883979
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005201790.5 → XP_005201847.1  transmembrane 4 L6 family member 18 isoform X1

      UniProtKB/TrEMBL
      A0A452DIX6
      Conserved Domains (1) summary
      pfam05805
      Location:1 → 90
      L6_membrane; L6 membrane protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3T110.1 GenPept UniProtKB/Swiss-Prot:Q3T110

    Gene LinkOut

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