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    ymp yellow-emperor [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43088, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ympprovided by FlyBase
    Official Full Name
    yellow-emperorprovided by FlyBase
    Primary source
    FLYBASE:FBgn0261287
    Locus tag
    Dmel_CG12250
    See related
    AllianceGenome:FB:FBgn0261287
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:AT03213; CG12250; Dmel\CG12250
    Summary
    Predicted to be involved in mRNA splicing, via spliceosome. Part of catalytic step 2 spliceosome and precatalytic spliceosome. Is expressed in adult head. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ymp in Genome Data Viewer
    Location:
    96E4-96E4; 3-88 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (25591502..25609127, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (21417224..21434849, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene musashi Neighboring gene long non-coding RNA:CR45910 Neighboring gene uncharacterized protein Neighboring gene mir-1000 stem loop Neighboring gene uncharacterized protein Neighboring gene Nuclear protein localization 4 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The origin of the Jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster. Wang W, et al. Mol Biol Evol, 2000 Sep. PMID 10958846
    2. Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila. Long M, et al. Gene, 1999 Sep 30. PMID 10570991
    3. Genomic scrap yard: how genomes utilize all that junk. Makałowski W. Gene, 2000 Dec 23. PMID 11163962
    4. Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila. Calvete O, et al. Mol Biol Evol, 2012 Jul. PMID 22328714, Free PMC Article
    5. Quantitative trait loci affecting the difference in pigmentation between Drosophila yakuba and D. santomea. Carbone MA, et al. Genetics, 2005 Sep. PMID 15972457, Free PMC Article

    See all (29) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome HDA PubMed 
    part_of precatalytic spliceosome HDA PubMed 

    General protein information

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    Preferred Names
    yellow-emperor
    Names
    CG12250-PA
    CG12250-PB
    CG12250-PC
    CG12250-PD
    ymp-PA
    ymp-PB
    ymp-PC
    ymp-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      25591502..25609127 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001300602.1 → NP_001287531.1  yellow-emperor, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287531.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4LHY0

    2. NM_001300601.1 → NP_001287530.1  yellow-emperor, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287530.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4LHN5

    3. NM_143147.3 → NP_651404.1  yellow-emperor, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651404.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VBQ0
      Related
      FBpp0084268

    4. NM_170230.2 → NP_733109.1  yellow-emperor, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_733109.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IMS7
      Related
      FBpp0084269
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4LHN5 A0A0B4LHN5
    A0A0B4LHY0 A0A0B4LHY0
    Q8IMS7 Q8IMS7
    Q9VBQ0 Q9VBQ0

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