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    mRpS18C mitochondrial ribosomal protein S18C [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43609, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mRpS18Cprovided by FlyBase
    Official Full Name
    mitochondrial ribosomal protein S18Cprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039765
    Locus tag
    Dmel_CG9688
    See related
    AllianceGenome:FB:FBgn0039765
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG9688; Dmel\CG9688; MRP-S18-(1); mRpS18a
    Summary
    Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Is expressed in adult head; adult heart; embryonic/larval midgut; and organism. Orthologous to human MRPS18C (mitochondrial ribosomal protein S18C). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See mRpS18C in Genome Data Viewer
    Location:
    99F4-99F4; 3-100 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (30423974..30424556)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (26249696..26250278)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic interactions of separase regulatory subunits reveal the diverged Drosophila Cenp-C homolog. Heeger S, et al. Genes Dev, 2005 Sep 1. PMID 16140985, Free PMC Article
    2. Genome-Wide Analysis of Drosophila RBf2 Protein Highlights the Diversity of RB Family Targets and Possible Role in Regulation of Ribosome Biosynthesis. Wei Y, et al. G3 (Bethesda), 2015 May 20. PMID 25999584, Free PMC Article
    3. The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present. Cavdar Koc E, et al. J Biol Chem, 2001 Jun 1. PMID 11279123
    4. Identification of novel modulators of mitochondrial function by a genome-wide RNAi screen in Drosophila melanogaster. Chen J, et al. Genome Res, 2008 Jan. PMID 18042644, Free PMC Article
    5. The SIN3 deacetylase complex represses genes encoding mitochondrial proteins: implications for the regulation of energy metabolism. Pile LA, et al. J Biol Chem, 2003 Sep 26. PMID 12865422

    See all (35) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables small ribosomal subunit rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables structural constituent of ribosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mitochondrial small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of mitochondrial small ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    part_of mitochondrial small ribosomal subunit TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    mitochondrial ribosomal protein S18C
    Names
    CG9688-PA
    mRpS18C-PA
    mitochondrial ribosomal protein S18a

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      30423974..30424556
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_079854.2 → NP_524593.1  mitochondrial ribosomal protein S18C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_524593.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VA81
      Related
      FBpp0084989
      Conserved Domains (1) summary
      pfam01084
      Location:61 → 113
      Ribosomal_S18; Ribosomal protein S18
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VA81 Q9VA81

    Gene LinkOut

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