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    CPEB4 cytoplasmic polyadenylation element binding protein 4 [ Bos taurus (domestic cattle) ]

    Gene ID: 538794, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CPEB4provided by VGNC
    Official Full Name
    cytoplasmic polyadenylation element binding protein 4provided by VGNC
    Primary source
    VGNC:VGNC:27650
    See related
    BGD:BT12754; Ensembl:ENSBTAG00000009995
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CPEB4 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 20 NC_037347.1 (5606033..5678509)

    Chromosome 20 - NC_037347.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104976640 Neighboring gene CD151 antigen-like Neighboring gene ribonuclease UK114 pseudogene Neighboring gene chromosome 20 C5orf47 homolog Neighboring gene stress-induced-phosphoprotein 1-like Neighboring gene neuronal vesicle trafficking associated 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037347.1 Chromosome 20 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC159945

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA regulatory element binding translation repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation factor activity, RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytoplasmic polyadenylation element-binding protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037347.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      5606033..5678509
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003587502.4 → XP_003587550.1  cytoplasmic polyadenylation element-binding protein 4 isoform X1

      See identical proteins and their annotated locations for XP_003587550.1

      UniProtKB/TrEMBL
      E1BGL4
      Related
      ENSBTAP00000013177.6, ENSBTAT00000013177.7
      Conserved Domains (3) summary
      cd12724
      Location:472 → 563
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:580 → 660
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:655 → 716
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    2. XM_005221433.3 → XP_005221490.1  cytoplasmic polyadenylation element-binding protein 4 isoform X2

      See identical proteins and their annotated locations for XP_005221490.1

      UniProtKB/TrEMBL
      A0A3Q1LXD4
      Related
      ENSBTAP00000060180.1, ENSBTAT00000085786.2
      Conserved Domains (3) summary
      cd12724
      Location:464 → 555
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:572 → 652
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:647 → 708
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    3. XM_005221434.4 → XP_005221491.1  cytoplasmic polyadenylation element-binding protein 4 isoform X3

      See identical proteins and their annotated locations for XP_005221491.1

      UniProtKB/TrEMBL
      A0A3Q1MMX4
      Related
      ENSBTAP00000072546.1, ENSBTAT00000080489.2
      Conserved Domains (3) summary
      cd12724
      Location:447 → 538
      RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      cd12726
      Location:555 → 635
      RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
      pfam16366
      Location:630 → 691
      CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001105420.1: Suppressed sequence

      Description
      NM_001105420.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: CPEB4 (GeneID:80315).
    Nucleotide Protein Strain
    Heading Accession and Version

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