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    EFNA4 ephrin A4 [ Bos taurus (domestic cattle) ]

    Gene ID: 615879, updated on 29-Jan-2025

    Summary

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    Official Symbol
    EFNA4provided by VGNC
    Official Full Name
    ephrin A4provided by VGNC
    Primary source
    VGNC:VGNC:28357
    See related
    BGD:BT20796; Ensembl:ENSBTAG00000010673
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See EFNA4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (15532649..15536764, complement)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene ephrin A1 Neighboring gene ephrin A3 Neighboring gene ADAM metallopeptidase domain 15 Neighboring gene DC-STAMP domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ephrin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ephrin receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ephrin-A4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101249.2 → NP_001094719.1  ephrin-A4 precursor

      See identical proteins and their annotated locations for NP_001094719.1

      Status: PROVISIONAL

      Source sequence(s)
      BC148126
      UniProtKB/TrEMBL
      A0AAA9TAZ4, A6QLY0
      Related
      ENSBTAP00070009446.1, ENSBTAT00070016431.1
      Conserved Domains (1) summary
      cd10425
      Location:27 → 155
      Ephrin-A_Ectodomain; Ectodomain of Ephrin A

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      15532649..15536764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005203749.5 → XP_005203806.1  ephrin-A4 isoform X3

      Conserved Domains (1) summary
      cd10425
      Location:27 → 150
      Ephrin-A_Ectodomain; Ectodomain of Ephrin A

    2. XM_005203752.5 → XP_005203809.1  ephrin-A4 isoform X5

      Conserved Domains (1) summary
      cd10425
      Location:27 → 154
      Ephrin-A_Ectodomain; Ectodomain of Ephrin A

    3. XM_005203747.5 → XP_005203804.1  ephrin-A4 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TAZ4
      Conserved Domains (1) summary
      cd10425
      Location:27 → 154
      Ephrin-A_Ectodomain; Ectodomain of Ephrin A

    4. XM_005203748.5 → XP_005203805.1  ephrin-A4 isoform X2

      Conserved Domains (1) summary
      cd10425
      Location:27 → 151
      Ephrin-A_Ectodomain; Ectodomain of Ephrin A

    5. XM_005203751.5 → XP_005203808.1  ephrin-A4 isoform X4

      Conserved Domains (1) summary
      cd10425
      Location:27 → 155
      Ephrin-A_Ectodomain; Ectodomain of Ephrin A
    Nucleotide Protein Strain
    Heading Accession and Version

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