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    RNPS1 RNA binding protein with serine rich domain 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 504506, updated on 27-Dec-2024

    Summary

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    Gene symbol
    RNPS1
    Gene description
    RNA binding protein with serine rich domain 1
    See related
    BGD:BT20369; Ensembl:ENSBTAG00000009969
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RNPS1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (1778565..1787583, complement)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene deoxyribonuclease 1 like 2 Neighboring gene enoyl-CoA delta isomerase 1 Neighboring gene microRNA mir-940 Neighboring gene ATP binding cassette subfamily A member 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC166060

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ASAP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein with serine-rich domain 1
    Names
    RNA binding protein S1, serine-rich domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101841.1 → NP_001095311.1  RNA-binding protein with serine-rich domain 1

      See identical proteins and their annotated locations for NP_001095311.1

      Status: PROVISIONAL

      Source sequence(s)
      BC150075
      UniProtKB/Swiss-Prot
      A6QR16
      Related
      ENSBTAP00000013151.4, ENSBTAT00000013151.6
      Conserved Domains (1) summary
      cd12365
      Location:163 → 236
      RRM_RNPS1; RNA recognition motif (RRM) found in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      1778565..1787583 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005224391.5 → XP_005224448.1  RNA-binding protein with serine-rich domain 1 isoform X2

      See identical proteins and their annotated locations for XP_005224448.1

      UniProtKB/TrEMBL
      A0A3Q1MPU8
      Related
      ENSBTAP00000073960.1, ENSBTAT00000068914.2
      Conserved Domains (1) summary
      cd12365
      Location:140 → 213
      RRM_RNPS1; RNA recognition motif in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins

    2. XM_005224390.5 → XP_005224447.1  RNA-binding protein with serine-rich domain 1 isoform X1

      See identical proteins and their annotated locations for XP_005224447.1

      UniProtKB/Swiss-Prot
      A6QR16
      Related
      ENSBTAP00000067106.2, ENSBTAT00000078713.2
      Conserved Domains (1) summary
      cd12365
      Location:163 → 236
      RRM_RNPS1; RNA recognition motif (RRM) found in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins

    3. XM_005224388.5 → XP_005224445.1  RNA-binding protein with serine-rich domain 1 isoform X1

      See identical proteins and their annotated locations for XP_005224445.1

      UniProtKB/Swiss-Prot
      A6QR16
      Conserved Domains (1) summary
      cd12365
      Location:163 → 236
      RRM_RNPS1; RNA recognition motif (RRM) found in RNA-binding protein with serine-rich domain 1 (RNPS1) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QR16.1 GenPept UniProtKB/Swiss-Prot:A6QR16

    Gene LinkOut

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