U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SYNGR1 synaptogyrin 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 534995, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SYNGR1provided by VGNC
    Official Full Name
    synaptogyrin 1provided by VGNC
    Primary source
    VGNC:VGNC:35524
    See related
    BGD:BT29773; Ensembl:ENSBTAG00000005765
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SYNGR1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (110778215..110808558)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD43 Neighboring gene uncharacterized LOC132345358 Neighboring gene ribosomal protein L3 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene TGF-beta activated kinase 1 (MAP3K7) binding protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC128630

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in neuromuscular junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    synaptogyrin-1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034623.1 → NP_001029795.1  synaptogyrin-1

      See identical proteins and their annotated locations for NP_001029795.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103195
      UniProtKB/TrEMBL
      A0A3Q1NHB1, Q3SZ33
      Related
      ENSBTAP00000040308.1, ENSBTAT00000042673.3
      Conserved Domains (1) summary
      pfam01284
      Location:21 → 167
      MARVEL; Membrane-associating domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      110778215..110808558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005207334.5 → XP_005207391.1  synaptogyrin-1 isoform X1

      See identical proteins and their annotated locations for XP_005207391.1

      UniProtKB/TrEMBL
      A0AAA9TPD3
      Related
      ENSBTAP00000098878.1, ENSBTAT00000121623.1
      Conserved Domains (1) summary
      pfam01284
      Location:21 → 167
      MARVEL; Membrane-associating domain

    2. XM_010805714.4 → XP_010804016.1  synaptogyrin-1 isoform X2

      Conserved Domains (1) summary
      pfam01284
      Location:21 → 161
      MARVEL; Membrane-associating domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.