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    PSMD11 proteasome 26S subunit, non-ATPase 11 [ Bos taurus (domestic cattle) ]

    Gene ID: 513461, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PSMD11provided by VGNC
    Official Full Name
    proteasome 26S subunit, non-ATPase 11provided by VGNC
    Primary source
    VGNC:VGNC:33462
    See related
    BGD:BT23764; Ensembl:ENSBTAG00000018897
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PSMD11 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (17700534..17729486, complement)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene myosin ID Neighboring gene small ribosomal subunit protein eS24-like Neighboring gene cyclin dependent kinase 5 regulatory subunit 1 Neighboring gene chromosome 19 C17orf75 homolog Neighboring gene zinc finger protein 207 Neighboring gene transfer RNA glutamine (anticodon UUG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC137609

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome regulatory particle, lid subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome non-ATPase regulatory subunit 11
    Names
    26S proteasome regulatory subunit RPN6
    proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
    proteasome 26S non-ATPase subunit 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046148.1 → NP_001039613.1  26S proteasome non-ATPase regulatory subunit 11

      See identical proteins and their annotated locations for NP_001039613.1

      Status: PROVISIONAL

      Source sequence(s)
      BC112777
      UniProtKB/Swiss-Prot
      A1L5A1, F1MXM5, Q2KI42
      UniProtKB/TrEMBL
      A0A3Q1MDI3
      Related
      ENSBTAP00000025152.5, ENSBTAT00000025152.6
      Conserved Domains (1) summary
      COG5159
      Location:17 → 421
      RPN6; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      17700534..17729486 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024980015.2 → XP_024835783.1  26S proteasome non-ATPase regulatory subunit 11 isoform X1

      UniProtKB/Swiss-Prot
      A1L5A1, F1MXM5, Q2KI42
      UniProtKB/TrEMBL
      A0A3Q1MDI3
      Conserved Domains (1) summary
      COG5159
      Location:17 → 421
      RPN6; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2KI42.3 GenPept UniProtKB/Swiss-Prot:Q2KI42

    Gene LinkOut

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