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    PUM3 pumilio RNA binding family member 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 514957, updated on 29-Jan-2025

    Summary

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    Official Symbol
    PUM3provided by VGNC
    Official Full Name
    pumilio RNA binding family member 3provided by VGNC
    Primary source
    VGNC:VGNC:33571
    See related
    BGD:BT26759; Ensembl:ENSBTAG00000013357
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    KIAA0020
    Orthologs
    human mouse all
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    Genomic context

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    See PUM3 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (41654996..41696338)

    Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene voltage-dependent anion-selective channel protein 3-like Neighboring gene uncharacterized LOC101905770 Neighboring gene uncharacterized LOC132345950 Neighboring gene potassium voltage-gated channel modifier subfamily V member 2 Neighboring gene uncharacterized LOC132345949

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pumilio homolog 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098030.1 → NP_001091499.1  pumilio homolog 3

      See identical proteins and their annotated locations for NP_001091499.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133332
      UniProtKB/TrEMBL
      A0AAA9S018, A2VDN9
      Related
      ENSBTAP00070005436.1, ENSBTAT00070009575.1
      Conserved Domains (2) summary
      cl21719
      Location:181 → 441
      Pumilio; Pumilio-family RNA binding domain
      pfam08144
      Location:433 → 569
      CPL; CPL (NUC119) domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      41654996..41696338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059889068.1 → XP_059745051.1  pumilio homolog 3 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S018

    2. XM_059889065.1 → XP_059745048.1  pumilio homolog 3 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S018

    3. XM_059889066.1 → XP_059745049.1  pumilio homolog 3 isoform X2

      UniProtKB/TrEMBL
      A0AAA9S018, A2VDN9
      Related
      ENSBTAP00070005440.1, ENSBTAT00070009579.1

    4. XM_059889067.1 → XP_059745050.1  pumilio homolog 3 isoform X3

      UniProtKB/TrEMBL
      A0AAA9S018

    5. XM_010807854.4 → XP_010806156.1  pumilio homolog 3 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S018
      Conserved Domains (2) summary
      cl21719
      Location:181 → 441
      Pumilio; Pumilio-family RNA binding domain
      pfam08144
      Location:433 → 569
      CPL; CPL (NUC119) domain

    6. XM_015472481.3 → XP_015327967.1  pumilio homolog 3 isoform X3

      UniProtKB/TrEMBL
      A0AAA9S018
      Conserved Domains (2) summary
      cl21719
      Location:164 → 424
      Pumilio; Pumilio-family RNA binding domain
      pfam08144
      Location:416 → 552
      CPL; CPL (NUC119) domain

    7. XM_024995691.2 → XP_024851459.1  pumilio homolog 3 isoform X4

      UniProtKB/TrEMBL
      A0AAA9S018
      Conserved Domains (2) summary
      pfam08144
      Location:416 → 556
      CPL; CPL (NUC119) domain
      cl28443
      Location:164 → 424
      Pumilio; Pumilio-family RNA binding domain
    Nucleotide Protein Strain
    Heading Accession and Version

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