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    COLEC12 collectin subfamily member 12 [ Bos taurus (domestic cattle) ]

    Gene ID: 504741, updated on 30-Jan-2025

    Summary

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    Official Symbol
    COLEC12provided by VGNC
    Official Full Name
    collectin subfamily member 12provided by VGNC
    Primary source
    VGNC:VGNC:27579
    See related
    EnsemblRapid:ENSBTAG00070024294
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See COLEC12 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 24 NC_037351.1 (35248808..35434069, complement)

    Chromosome 24 - NC_037351.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 14 Neighboring gene THO complex subunit 1 Neighboring gene uncharacterized LOC101902862 Neighboring gene microRNA mir-544b-2 Neighboring gene uncharacterized LOC112444249 Neighboring gene centrin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037351.1 Chromosome 24 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC155255

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collectin-12
    Names
    CL-P1
    collectin placenta protein 1
    collectin sub-family member 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101843.1 → NP_001095313.1  collectin-12

      See identical proteins and their annotated locations for NP_001095313.1

      Status: PROVISIONAL

      Source sequence(s)
      BC149193
      UniProtKB/Swiss-Prot
      A6QP79
      UniProtKB/TrEMBL
      A0A3Q1N1S7
      Related
      ENSBTAP00070032840.1, ENSBTAT00070054832.1
      Conserved Domains (3) summary
      cd03590
      Location:607 → 732
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam01391
      Location:454 → 569
      Collagen; Collagen triple helix repeat (20 copies)
      cl19580
      Location:51 → 430
      YhgE; Uncharacterized membrane protein YhgE, phage infection protein (PIP) family [Function unknown]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037351.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      35248808..35434069 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QP79.1 GenPept UniProtKB/Swiss-Prot:A6QP79

    Gene LinkOut

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