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    SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 534171, updated on 29-Jan-2025

    Summary

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    Official Symbol
    SAMSN1provided by VGNC
    Official Full Name
    SAM domain, SH3 domain and nuclear localization signals 1provided by VGNC
    Primary source
    VGNC:VGNC:34279
    See related
    BGD:BT27145; Ensembl:ENSBTAG00000002623
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human all
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    Genomic context

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    See SAMSN1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (22617489..22675629)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene putative uncharacterized protein ENSP00000383407 Neighboring gene uncharacterized LOC112447289 Neighboring gene glucose-6-phosphatase 3-like Neighboring gene heat shock protein family A (Hsp70) member 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC128111

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphotyrosine residue binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of B cell activation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of peptidyl-tyrosine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SAM domain-containing protein SAMSN-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035404.1 → NP_001030481.1  SAM domain-containing protein SAMSN-1

      See identical proteins and their annotated locations for NP_001030481.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103062
      UniProtKB/TrEMBL
      A0A3Q1LRI5, Q3ZBW8
      Related
      ENSBTAP00070000361.1, ENSBTAT00070000572.1
      Conserved Domains (3) summary
      cd09561
      Location:240 → 303
      SAM_SAMSN1; SAM domain of SAMSN1 subfamily
      pfam12485
      Location:17 → 164
      SLY; Lymphocyte signaling adaptor protein
      cl17036
      Location:167 → 218
      SH3; Src Homology 3 domain superfamily

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      22617489..22675629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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