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    HNRNPK heterogeneous nuclear ribonucleoprotein K [ Bos taurus (domestic cattle) ]

    Gene ID: 528135, updated on 27-Dec-2024

    Summary

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    Official Symbol
    HNRNPKprovided by VGNC
    Official Full Name
    heterogeneous nuclear ribonucleoprotein Kprovided by VGNC
    Primary source
    VGNC:VGNC:29897
    See related
    BGD:BT17406; Ensembl:ENSBTAG00000021131
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    HNRPK
    Orthologs
    human mouse all
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    Genomic context

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    See HNRNPK in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (77218408..77229651, complement)

    Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene phosphoserine aminotransferase-like Neighboring gene Q-nucleotide N-glycosylase 1 Neighboring gene microRNA mir-7-2 Neighboring gene RecQ mediated genome instability 1 Neighboring gene solute carrier family 28 member 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC127613

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein K
    Names
    hnRNP K

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034562.1 → NP_001029734.1  heterogeneous nuclear ribonucleoprotein K

      Status: PROVISIONAL

      Source sequence(s)
      BC102450
      UniProtKB/Swiss-Prot
      Q3T0D0
      Conserved Domains (4) summary
      pfam08067
      Location:4 → 43
      ROKNT; ROKNT (NUC014) domain
      cd22432
      Location:42 → 105
      KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22433
      Location:144 → 213
      KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22434
      Location:387 → 460
      KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      77218408..77229651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005210330.4 → XP_005210387.1  heterogeneous nuclear ribonucleoprotein K isoform X1

      UniProtKB/Swiss-Prot
      Q3T0D0
      Conserved Domains (4) summary
      pfam08067
      Location:4 → 43
      ROKNT; ROKNT (NUC014) domain
      cd22432
      Location:42 → 105
      KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22433
      Location:144 → 213
      KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22434
      Location:387 → 460
      KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

    2. XM_015472618.3 → XP_015328104.1  heterogeneous nuclear ribonucleoprotein K isoform X4

      UniProtKB/TrEMBL
      A0A3Q1N9S5
      Related
      ENSBTAP00000067919.2, ENSBTAT00000080396.2
      Conserved Domains (4) summary
      pfam08067
      Location:4 → 43
      ROKNT; ROKNT (NUC014) domain
      cd22432
      Location:42 → 105
      KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22433
      Location:120 → 189
      KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22434
      Location:363 → 436
      KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

    3. XM_005210334.5 → XP_005210391.1  heterogeneous nuclear ribonucleoprotein K isoform X3

      Conserved Domains (4) summary
      pfam08067
      Location:4 → 43
      ROKNT; ROKNT (NUC014) domain
      cd22432
      Location:42 → 105
      KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22433
      Location:120 → 189
      KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22434
      Location:363 → 436
      KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

    4. XM_010808097.4 → XP_010806399.1  heterogeneous nuclear ribonucleoprotein K isoform X2

      UniProtKB/TrEMBL
      A0A3Q1NEH2, A0AAF6Z995
      Related
      ENSBTAP00000028162.5, ENSBTAT00000028162.6
      Conserved Domains (4) summary
      pfam08067
      Location:4 → 43
      ROKNT; ROKNT (NUC014) domain
      cd22432
      Location:42 → 105
      KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22433
      Location:144 → 213
      KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22434
      Location:387 → 460
      KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

    5. XM_005210331.5 → XP_005210388.1  heterogeneous nuclear ribonucleoprotein K isoform X1

      UniProtKB/Swiss-Prot
      Q3T0D0
      Conserved Domains (4) summary
      pfam08067
      Location:4 → 43
      ROKNT; ROKNT (NUC014) domain
      cd22432
      Location:42 → 105
      KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22433
      Location:144 → 213
      KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22434
      Location:387 → 460
      KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

    6. XM_005210329.5 → XP_005210386.1  heterogeneous nuclear ribonucleoprotein K isoform X1

      UniProtKB/Swiss-Prot
      Q3T0D0
      Conserved Domains (4) summary
      pfam08067
      Location:4 → 43
      ROKNT; ROKNT (NUC014) domain
      cd22432
      Location:42 → 105
      KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22433
      Location:144 → 213
      KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22434
      Location:387 → 460
      KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

    7. XM_059889119.1 → XP_059745102.1  heterogeneous nuclear ribonucleoprotein K isoform X1

      UniProtKB/Swiss-Prot
      Q3T0D0

    8. XM_024995763.2 → XP_024851531.1  heterogeneous nuclear ribonucleoprotein K isoform X3

      Conserved Domains (4) summary
      pfam08067
      Location:4 → 43
      ROKNT; ROKNT (NUC014) domain
      cd22432
      Location:42 → 105
      KH-I_HNRNPK_rpt1; first type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22433
      Location:120 → 189
      KH-I_HNRNPK_rpt2; second type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
      cd22434
      Location:363 → 436
      KH-I_HNRNPK_rpt3; third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins

    9. XM_059889120.1 → XP_059745103.1  heterogeneous nuclear ribonucleoprotein K isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3T0D0.1 GenPept UniProtKB/Swiss-Prot:Q3T0D0

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