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    ERGIC1 endoplasmic reticulum-golgi intermediate compartment 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 616293, updated on 27-Dec-2024

    Summary

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    Official Symbol
    ERGIC1provided by VGNC
    Official Full Name
    endoplasmic reticulum-golgi intermediate compartment 1provided by VGNC
    Primary source
    VGNC:VGNC:28578
    See related
    BGD:BT26489; Ensembl:ENSBTAG00000015955
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ERGIC1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 20 NC_037347.1 (4595084..4709462)

    Chromosome 20 - NC_037347.1Genomic Context describing neighboring genes Neighboring gene neuralized E3 ubiquitin protein ligase 1B Neighboring gene dual specificity phosphatase 1 Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene uncharacterized LOC112442979 Neighboring gene ribosomal protein L26 like 1 Neighboring gene ATPase H+ transporting V0 subunit e1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037347.1 Chromosome 20 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC143330

    General protein information

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    Preferred Names
    endoplasmic reticulum-Golgi intermediate compartment protein 1
    Names
    endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
    endoplasmic reticulum-golgi intermediate compartment 32 kDa protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076417.1 → NP_001069885.1  endoplasmic reticulum-Golgi intermediate compartment protein 1

      See identical proteins and their annotated locations for NP_001069885.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120357
      UniProtKB/TrEMBL
      A0AAA9RZC4, Q0VC47
      Related
      ENSBTAP00000021218.6, ENSBTAT00000021218.7
      Conserved Domains (2) summary
      pfam07970
      Location:104 → 271
      COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
      pfam13850
      Location:5 → 94
      ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037347.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      4595084..4709462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059878792.1 → XP_059734775.1  endoplasmic reticulum-Golgi intermediate compartment protein 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RZC4

    2. XM_005221420.2 → XP_005221477.1  endoplasmic reticulum-Golgi intermediate compartment protein 1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9RZC4, A0AAA9T3D4
      Related
      ENSBTAP00000092281.1, ENSBTAT00000126083.1
      Conserved Domains (2) summary
      pfam07970
      Location:108 → 275
      COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
      pfam13850
      Location:11 → 102
      ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
    Nucleotide Protein Strain
    Heading Accession and Version

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