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    AAR2 AAR2 splicing factor [ Bos taurus (domestic cattle) ]

    Gene ID: 533351, updated on 29-Jan-2025

    Summary

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    Official Symbol
    AAR2provided by VGNC
    Official Full Name
    AAR2 splicing factorprovided by VGNC
    Primary source
    VGNC:VGNC:25446
    See related
    BGD:BT23642; Ensembl:ENSBTAG00000001645
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C20orf4; C13H20orf4
    Orthologs
    human mouse all
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    Genomic context

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    See AAR2 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (65359850..65380075)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene erythrocyte membrane protein band 4.1 like 1 Neighboring gene uncharacterized LOC132346849 Neighboring gene uncharacterized LOC112441542 Neighboring gene DLG associated protein 4 Neighboring gene myosin light chain 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC143142

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in spliceosomal tri-snRNP complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein AAR2 homolog
    Names
    AAR2 splicing factor homolog
    uncharacterized protein C20orf4 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034587.1 → NP_001029759.1  protein AAR2 homolog

      See identical proteins and their annotated locations for NP_001029759.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021814
      UniProtKB/TrEMBL
      Q58CY3
      Related
      ENSBTAP00070047859.1, ENSBTAT00070078581.1
      Conserved Domains (3) summary
      cd13777
      Location:2 → 123
      Aar2_N; N-terminal domain of Aar2, a U5 small nuclear ribonucleoprotein particle assembly factor
      cd13778
      Location:180 → 334
      Aar2_C; C-terminal domain of Aar2, a U5 small nuclear ribonucleoprotein particle assembly factor
      pfam05282
      Location:2 → 339
      AAR2; AAR2 protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      65359850..65380075
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005214766.5 → XP_005214823.1  protein AAR2 homolog isoform X1

      See identical proteins and their annotated locations for XP_005214823.1

      UniProtKB/Swiss-Prot
      Q08DJ7
      Conserved Domains (1) summary
      pfam05282
      Location:17 → 363
      AAR2; AAR2 protein

    2. XM_005214765.4 → XP_005214822.1  protein AAR2 homolog isoform X1

      See identical proteins and their annotated locations for XP_005214822.1

      UniProtKB/Swiss-Prot
      Q08DJ7
      Conserved Domains (1) summary
      pfam05282
      Location:17 → 363
      AAR2; AAR2 protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08DJ7.1 GenPept UniProtKB/Swiss-Prot:Q08DJ7

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