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    PHF20 PHD finger protein 20 [ Bos taurus (domestic cattle) ]

    Gene ID: 529591, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PHF20provided by VGNC
    Official Full Name
    PHD finger protein 20provided by VGNC
    Primary source
    VGNC:VGNC:32819
    See related
    BGD:BT16196; Ensembl:ENSBTAG00000005571
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PHF20 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (64956088..65084296)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene reactive oxygen species modulator 1 Neighboring gene RNA binding motif protein 39 Neighboring gene SCAN domain containing 1 Neighboring gene cyclic nucleotide binding domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MLL1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of NSL complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001168426.1 → NP_001161898.1  PHD finger protein 20

      See identical proteins and their annotated locations for NP_001161898.1

      Status: INFERRED

      Source sequence(s)
      NKLS02000013
      UniProtKB/TrEMBL
      A0AAA9S1T4, A0AAA9S206
      Conserved Domains (4) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15634
      Location:656 → 699
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam10243
      Location:105 → 312
      MIP-T3; Microtubule-binding protein MIP-T3
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      64956088..65084296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059892644.1 → XP_059748627.1  PHD finger protein 20 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S1T4

    2. XM_010811483.4 → XP_010809785.1  PHD finger protein 20 isoform X1

      See identical proteins and their annotated locations for XP_010809785.1

      UniProtKB/TrEMBL
      A0AAA9S1T4
      Conserved Domains (5) summary
      cd04508
      Location:101 → 146
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15634
      Location:667 → 710
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam07039
      Location:44 → 139
      DUF1325; SGF29 tudor-like domain
      pfam10243
      Location:116 → 323
      MIP-T3; Microtubule-binding protein MIP-T3
      cl17705
      Location:3 → 79
      MBT; mbt repeat

    3. XM_015474164.3 → XP_015329650.1  PHD finger protein 20 isoform X3

      UniProtKB/TrEMBL
      A0AAA9S1T4
      Conserved Domains (5) summary
      cd04508
      Location:101 → 146
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15634
      Location:574 → 617
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam07039
      Location:44 → 139
      DUF1325; SGF29 tudor-like domain
      pfam12618
      Location:186 → 269
      DUF3776; Protein of unknown function (DUF3776)
      cl17705
      Location:3 → 79
      MBT; mbt repeat

    4. XM_005214740.5 → XP_005214797.1  PHD finger protein 20 isoform X2

      See identical proteins and their annotated locations for XP_005214797.1

      UniProtKB/TrEMBL
      A0AAA9S1T4, A0AAA9S206
      Related
      ENSBTAP00000077346.1, ENSBTAT00000103222.1
      Conserved Domains (4) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15634
      Location:656 → 699
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam10243
      Location:105 → 312
      MIP-T3; Microtubule-binding protein MIP-T3
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    5. XM_059892645.1 → XP_059748628.1  PHD finger protein 20 isoform X4

      UniProtKB/TrEMBL
      A0AAA9S1T4, A0AAA9SRT0
      Related
      ENSBTAP00000085683.1, ENSBTAT00000091619.1

    6. XM_025000666.2 → XP_024856434.1  PHD finger protein 20 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S1T4
      Conserved Domains (5) summary
      cd04508
      Location:101 → 146
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15634
      Location:667 → 710
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam07039
      Location:44 → 139
      DUF1325; SGF29 tudor-like domain
      pfam10243
      Location:116 → 323
      MIP-T3; Microtubule-binding protein MIP-T3
      cl17705
      Location:3 → 79
      MBT; mbt repeat

    7. XM_059892646.1 → XP_059748629.1  PHD finger protein 20 isoform X5

      UniProtKB/TrEMBL
      A0AAA9S1T4

    8. XM_005214742.4 → XP_005214799.1  PHD finger protein 20 isoform X6

      See identical proteins and their annotated locations for XP_005214799.1

      UniProtKB/TrEMBL
      A0AAA9S1T4
      Conserved Domains (2) summary
      cd15634
      Location:518 → 561
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam12618
      Location:37 → 120
      DUF3776; Protein of unknown function (DUF3776)
    Nucleotide Protein Strain
    Heading Accession and Version

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