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    SNX5 sorting nexin 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 514423, updated on 1-Jan-2025

    Summary

    Gene symbol
    SNX5
    Gene description
    sorting nexin 5
    See related
    BGD:BT26360; Ensembl:ENSBTAG00000003422
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
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    Genomic context

    See SNX5 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (38215108..38240162, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104973774 Neighboring gene small ribosomal subunit protein uS12-like Neighboring gene small nucleolar RNA SNORD17 Neighboring gene microRNA mir-12034 Neighboring gene mitochondrial genome maintenance exonuclease 1 Neighboring gene ovo like zinc finger 2

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    General gene information

    Clone Names

    • MGC128439

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dynactin binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in pinocytosis IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034464.2NP_001029636.1  sorting nexin-5

      See identical proteins and their annotated locations for NP_001029636.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103213
      UniProtKB/Swiss-Prot
      Q3ZBM5
      UniProtKB/TrEMBL
      A0AAA9S5I4
      Related
      ENSBTAP00000078512.1, ENSBTAT00000109001.1
      Conserved Domains (2) summary
      cd07291
      Location:29169
      PX_SNX5; The phosphoinositide binding Phox Homology domain of Sorting Nexin 5
      cd07663
      Location:185402
      BAR_SNX5; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      38215108..38240162 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015474030.3XP_015329516.1  sorting nexin-5 isoform X3

      UniProtKB/TrEMBL
      A0AAA9S5I4
      Conserved Domains (2) summary
      cd07663
      Location:80297
      BAR_SNX5; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5
      cl02563
      Location:164
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    2. XM_059892570.1XP_059748553.1  sorting nexin-5 isoform X2

      UniProtKB/TrEMBL
      A0AAA9S5I4
    3. XM_059892569.1XP_059748552.1  sorting nexin-5 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S5I4, A0AAF6ZDE8
    4. XM_059892568.1XP_059748551.1  sorting nexin-5 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S5I4, A0AAF6ZDE8
      Related
      ENSBTAP00000039205.4, ENSBTAT00000039411.5