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    2010106E10Rik RIKEN cDNA 2010106E10 gene [ Mus musculus (house mouse) ]

    Gene ID: 67715, updated on 27-Nov-2024

    Summary

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    Official Symbol
    2010106E10Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2010106E10 geneprovided by MGI
    Primary source
    MGI:MGI:1914965
    See related
    Ensembl:ENSMUSG00000025528 AllianceGenome:MGI:1914965
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in small intestine. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in large intestine adult (RPKM 23.9), small intestine adult (RPKM 10.3) and 1 other tissue See more
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    Genomic context

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    See 2010106E10Rik in Genome Data Viewer
    Location:
    X E1; X 48.76 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (111404971..111468040)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (112495274..112558343)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene ubinuclein 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47778 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene zinc finger protein 711 Neighboring gene premature ovarian failure 1B Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. C to U RNA editing mediated by APOBEC1 requires RNA-binding protein RBM47. Fossat N, et al. EMBO Rep, 2014 Aug. PMID 24916387, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC67715

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001168590.1 → NP_001162062.1  uncharacterized protein LOC67715 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001162062.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK008319, AK017156, AV080583
      Consensus CDS
      CCDS53174.1
      UniProtKB/TrEMBL
      A2ANY3
      Related
      ENSMUSP00000109039.3, ENSMUST00000113412.3
      Conserved Domains (1) summary
      pfam02158
      Location:90 → 201
      Neuregulin; Neuregulin family

    2. NM_026333.4 → NP_080609.2  uncharacterized protein LOC67715 isoform 2 precursor

      See identical proteins and their annotated locations for NP_080609.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1, resulting in an isoform (2) that is shorter than isoform 1.
      Source sequence(s)
      AK017156, AV080583
      Consensus CDS
      CCDS30360.1
      UniProtKB/TrEMBL
      Q9D3Q9
      Related
      ENSMUSP00000026602.3, ENSMUST00000026602.9
      Conserved Domains (1) summary
      pfam02158
      Location:90 → 193
      Neuregulin; Neuregulin family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      111404971..111468040
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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