U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    A230006K03Rik RIKEN cDNA A230006K03 gene [ Mus musculus (house mouse) ]

    Gene ID: 27493, updated on 12-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    A230006K03Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A230006K03 geneprovided by MGI
    Primary source
    MGI:MGI:3644205
    See related
    Ensembl:ENSMUSG00000068151 AllianceGenome:MGI:3644205
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CAG8; CAG-3; Gm7414; D0Kist2; DOKist2; Gm31445
    Summary
    Located in cytosol and nuclear body. Is expressed in central nervous system; dorsal root ganglion; neural retina; and trigeminal nerve. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in frontal lobe adult (RPKM 3.2), cortex adult (RPKM 2.9) and 4 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See A230006K03Rik in Genome Data Viewer
    Location:
    7; 7 C
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (60844731..60961397, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (61010265..61311649, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53389 Neighboring gene predicted gene, 51483 Neighboring gene predicted gene, 31652 Neighboring gene RIKEN cDNA B230209E15 gene Neighboring gene ubiquitin-conjugating enzyme E2N-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Structure and tissue distribution of a trinucleotide-repeat-containing gene (cag-3) expressed specifically in the mouse brain. Ji JW, et al. Mol Cells, 2005 Dec 31. PMID 16404148
    2. Analysis of cag-8: a novel poly(Q)-encoding gene in the mouse brain. Ji JW, et al. Biochem Biophys Res Commun, 2006 Aug 11. PMID 16793010
    3. Cloning of novel trinucleotide-repeat (CAG) containing genes in mouse brain. Kim SJ, et al. Biochem Biophys Res Commun, 1997 Nov 7. PMID 9367917
    4. Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation. Mould AW, et al. Epigenetics Chromatin, 2013 Jul 2. PMID 23819640, Free PMC Article
    5. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Clone Names

    • AC132685.1, B230208H21

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_169189.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC127223, AC132685
      Related
      ENSMUST00000245688.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      60844731..60961397 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_168893.1: Suppressed sequence

      Description
      NR_168893.1: This RefSeq was removed by NCBI staff.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.