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    Mrps18c mitochondrial ribosomal protein S18C [ Mus musculus (house mouse) ]

    Gene ID: 68735, updated on 9-Dec-2024

    Summary

    Official Symbol
    Mrps18cprovided by MGI
    Official Full Name
    mitochondrial ribosomal protein S18Cprovided by MGI
    Primary source
    MGI:MGI:1915985
    See related
    Ensembl:ENSMUSG00000016833 AllianceGenome:MGI:1915985
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110037D14Rik
    Summary
    Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Located in mitochondrion. Is expressed in several structures, including alimentary system; brain; foot mesenchyme; genitourinary system; and hemolymphoid system. Orthologous to human MRPS18C (mitochondrial ribosomal protein S18C). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in placenta adult (RPKM 32.7), liver E14 (RPKM 32.4) and 26 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Mrps18c in Genome Data Viewer
    Location:
    5 E4; 5 48.52 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (100946625..100952333)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (100798759..100804467)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36619 Neighboring gene helicase, POLQ-like Neighboring gene STARR-positive B cell enhancer ABC_E6351 Neighboring gene BRCA1 A complex subunit Neighboring gene predicted gene, 26286

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables small ribosomal subunit rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in mitochondrial translation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in translation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    part_of mitochondrial small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of mitochondrial small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    part_of mitochondrial small ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of mitochondrial small ribosomal subunit NAS
    Non-traceable Author Statement
    more info
    PubMed 
    located_in mitochondrion HDA PubMed 

    General protein information

    Preferred Names
    small ribosomal subunit protein bS18m
    Names
    28S ribosomal protein S18-1, mitochondrial
    28S ribosomal protein S18c, mitochondrial
    MRP-S18-1
    MRP-S18-c
    S18mt-c
    mrps18-c

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026826.1NP_081102.1  small ribosomal subunit protein bS18m

      See identical proteins and their annotated locations for NP_081102.1

      Status: PROVISIONAL

      Source sequence(s)
      BC028442
      Consensus CDS
      CCDS19468.1
      UniProtKB/Swiss-Prot
      Q3UKN5, Q8R2L5, Q9D100
      UniProtKB/TrEMBL
      Q8BTZ9
      Related
      ENSMUSP00000016977.9, ENSMUST00000016977.15
      Conserved Domains (1) summary
      pfam01084
      Location:73121
      Ribosomal_S18; Ribosomal protein S18

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      100946625..100952333
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)