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    LOC1269179 lysosomal aspartic protease [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1269179, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC1269179
    Gene description
    lysosomal aspartic protease
    See related
    VectorBase:AGAMI1_007086
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP003277
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC1269179 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (34375881..34453247)

    Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene SLIT and NTRK-like protein 4 Neighboring gene Polycomb protein Scm Neighboring gene diuretic hormone 44 Neighboring gene Dynein heavy chain 1 Neighboring gene uncharacterized LOC3290789 Neighboring gene coiled-coil domain-containing protein 149-B Neighboring gene bumetanide-sensitive sodium-(potassium)-chloride cotransporter Neighboring gene bumetanide-sensitive sodium-(potassium)-chloride cotransporter Neighboring gene probable RNA methyltransferase CG1239 Neighboring gene superkiller complex protein 3 Neighboring gene A-kinase anchor protein 17A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Gomez SM, et al. Genome Biol, 2005. PMID 15833126, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell death IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysosomal aspartic protease
    Names
    AGAP003277-PA
    AGAP003277-PB
    AGAP003277-PC
    AGAP003277-PD
    cathepsin D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      34375881..34453247
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061648041.1 → XP_061504025.1  lysosomal aspartic protease

      UniProtKB/TrEMBL
      F5HIR1, Q7PTQ9

    2. XM_003436383.2 → XP_003436431.2  lysosomal aspartic protease

      UniProtKB/TrEMBL
      F5HIR1, Q7PTQ9

    3. XM_307784.5 → XP_307784.2  lysosomal aspartic protease

      UniProtKB/TrEMBL
      F5HIR1, Q7PTQ9

    4. XM_003436384.2 → XP_003436432.2  lysosomal aspartic protease

      UniProtKB/TrEMBL
      F5HIR1, Q7PTQ9
    Nucleotide Protein Strain
    Heading Accession and Version

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