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    LOC1280813 U6 snRNA-associated Sm-like protein LSm8 [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1280813, updated on 22-Jun-2024

    Summary

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    Gene symbol
    LOC1280813
    Gene description
    U6 snRNA-associated Sm-like protein LSm8
    See related
    VectorBase:AGAMI1_008307
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP011837
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC1280813 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 3 NC_064602.1 (91296089..91296895, complement)

    Chromosome 3 - NC_064602.1Genomic Context describing neighboring genes Neighboring gene SET and MYND domain-containing protein 4-like Neighboring gene SET and MYND domain containing, class 4, member 4 Neighboring gene Organic solute carrier partner 1 Neighboring gene myeloid leukemia factor Neighboring gene uncoupling protein Bmcp mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064602.1 Chromosome 3 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm8
    Names
    AGAP011837-PA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064602.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      91296089..91296895 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_320680.2 → XP_320680.1  U6 snRNA-associated Sm-like protein LSm8

      See identical proteins and their annotated locations for XP_320680.1

      UniProtKB/TrEMBL
      Q7PZC3
      Conserved Domains (1) summary
      cd01727
      Location:1 → 90
      LSm8; Like-Sm protein 8
    Nucleotide Protein Strain
    Heading Accession and Version

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