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    PF3D7_0409100 U4/U6 small nuclear ribonucleoprotein PRP31, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 812409, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_0409100
    Gene description
    U4/U6 small nuclear ribonucleoprotein PRP31, putative
    Locus tag
    PF3D7_0409100
    See related
    PlasmoDB:PF3D7_0409100; VEuPathDB:PF3D7_0409100
    Gene type
    protein coding
    RNA name
    U4/U6 small nuclear ribonucleoprotein PRP31, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_0409100 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_004318.2 (436217..437981, complement)

    Chromosome 4 - NC_004318.2Genomic Context describing neighboring genes Neighboring gene tRNA N6-adenosine threonylcarbamoyltransferase Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene protein SOF1, putative Neighboring gene methyltransferase, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004318.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    2. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, et al. Nature, 2002 Oct 3. PMID 12368867

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within spliceosomal snRNP assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    U4/U6 small nuclear ribonucleoprotein PRP31, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004318.2 Reference assembly

      Range
      436217..437981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002808602.1 → XP_002808648.1  U4/U6 small nuclear ribonucleoprotein PRP31, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_002808648.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024VCR5, A0A024VTU5, A0A024WDQ9, A0A024XD83, A0A0L1I3X6, C0H4A0, W4J5M2, W7EYX7, W7JUJ5, W7KLS7
      Conserved Domains (2) summary
      pfam01798
      Location:165 → 390
      Nop; snoRNA binding domain, fibrillarin
      pfam09785
      Location:398 → 510
      Prp31_C; Prp31 C terminal domain
    Nucleotide Protein
    Heading Accession and Version

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