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    PF3D7_0503300 serine/arginine-rich splicing factor 12 [ Plasmodium falciparum 3D7 ]

    Gene ID: 812926, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_0503300
    Gene description
    serine/arginine-rich splicing factor 12
    Locus tag
    PF3D7_0503300
    See related
    PlasmoDB:PF3D7_0503300; VEuPathDB:PF3D7_0503300
    Gene type
    protein coding
    RNA name
    serine/arginine-rich splicing factor 12
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_0503300 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_004326.2 (135004..135930, complement)

    Chromosome 5 - NC_004326.2Genomic Context describing neighboring genes Neighboring gene 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene actin-depolymerizing factor 1 Neighboring gene protein kinase, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004326.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Inhibition of the SR protein-phosphorylating CLK kinases of Plasmodium falciparum impairs blood stage replication and malaria transmission. Kern S, et al. PLoS One, 2014. PMID 25188378, Free PMC Article
    2. Functional Characterization of the m(6)A-Dependent Translational Modulator PfYTH.2 in the Human Malaria Parasite. Sinha A, et al. mBio, 2021 Apr 27. PMID 33906926, Free PMC Article
    3. Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation. Briquet S, et al. PLoS One, 2018. PMID 30379851, Free PMC Article
    4. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    5. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables RNA binding HDA PubMed 
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor 12

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004326.2 Reference assembly

      Range
      135004..135930 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001351555.1 → XP_001351591.1  serine/arginine-rich splicing factor 12 [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001351591.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024VCU2, A0A024WWA3, A0A024XBM7, A0A0L1IAT4, A0A0L7KCC5, A0A0L7LZM6, A0A2I0BUC1, Q8I468, W4IMT9, W4IUD2, W7FCJ5, W7G2K8, W7JT94
      Conserved Domains (2) summary
      smart00360
      Location:13 → 85
      RRM; RNA recognition motif
      TIGR01642
      Location:114 → 227
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    Nucleotide Protein
    Heading Accession and Version

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