U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    9030622O22Rik RIKEN cDNA 9030622O22 gene [ Mus musculus (house mouse) ]

    Gene ID: 100043820, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    9030622O22Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9030622O22 geneprovided by MGI
    Primary source
    MGI:MGI:1918820
    See related
    Ensembl:ENSMUSG00000086141 AllianceGenome:MGI:1918820
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Alien; Falcor
    Summary
    Is expressed in central nervous system; gut; heart; liver; and lung. Orthologous to human LINC00261 (long intergenic non-protein coding RNA 261). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See 9030622O22Rik in Genome Data Viewer
    Location:
    2 G3; 2 73.22 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (147786383..147882123, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (147944459..148040513, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 35528 Neighboring gene predicted gene, 35579 Neighboring gene predicted gene, 46769 Neighboring gene STARR-seq mESC enhancer starr_05967 Neighboring gene forkhead box A2 Neighboring gene cofilin 1, non-muscle pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Differential chamber-specific expression and regulation of long non-coding RNAs during cardiac development. García-Padilla C, et al. Biochim Biophys Acta Gene Regul Mech, 2019 Oct. PMID 31678627
    2. The long noncoding RNA Falcor regulates Foxa2 expression to maintain lung epithelial homeostasis and promote regeneration. Swarr DT, et al. Genes Dev, 2019 Jun 1. PMID 30923168, Free PMC Article
    3. Identification of novel long noncoding RNAs underlying vertebrate cardiovascular development. Kurian L, et al. Circulation, 2015 Apr 7. PMID 25739401, Free PMC Article
    4. Long noncoding RNAs are spatially correlated with transcription factors and regulate lung development. Herriges MJ, et al. Genes Dev, 2014 Jun 15. PMID 24939938, Free PMC Article
    5. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Go to the top of the page Help

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_190121.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845297
      Related
      ENSMUST00000324834.1

    2. NR_190122.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845297
      Related
      ENSMUST00000324837.1

    3. NR_190123.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845297

    4. NR_190124.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845297
      Related
      ENSMUST00000324916.1

    5. NR_190125.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845297
      Related
      ENSMUST00000242366.2

    6. NR_190126.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845297

    7. NR_190127.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845297
      Related
      ENSMUST00000243423.1

    8. NR_190128.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845297
      Related
      ENSMUST00000324915.1

    9. NR_190129.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL845297
      Related
      ENSMUST00000324925.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      147786383..147882123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.