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    Spryd4 SPRY domain containing 4 [ Mus musculus (house mouse) ]

    Gene ID: 66701, updated on 27-Nov-2024

    Summary

    Official Symbol
    Spryd4provided by MGI
    Official Full Name
    SPRY domain containing 4provided by MGI
    Primary source
    MGI:MGI:1913951
    See related
    Ensembl:ENSMUSG00000051346 AllianceGenome:MGI:1913951
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4633402N23Rik
    Summary
    Located in mitochondrion. Is expressed in central nervous system and genitourinary system. Orthologous to human SPRYD4 (SPRY domain containing 4). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in liver E18 (RPKM 18.9), liver adult (RPKM 13.2) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Spryd4 in Genome Data Viewer
    Location:
    10 D3; 10 76.44 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (128045777..128047663, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (128209908..128211794, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene RNA binding motif, single stranded interacting protein 2 Neighboring gene STARR-positive B cell enhancer ABC_E11466 Neighboring gene STARR-seq mESC enhancer starr_28269 Neighboring gene STARR-positive B cell enhancer ABC_E11760 Neighboring gene predicted gene 4556 Neighboring gene glutaminase 2 (liver, mitochondrial) Neighboring gene STARR-positive B cell enhancer ABC_E725 Neighboring gene STARR-positive B cell enhancer ABC_E10659 Neighboring gene timeless circadian clock 1 Neighboring gene predicted gene, 26847 Neighboring gene major intrinsic protein of lens fiber Neighboring gene STARR-seq mESC enhancer starr_28273

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    SPRY domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025716.2NP_079992.1  SPRY domain-containing protein 4

      See identical proteins and their annotated locations for NP_079992.1

      Status: PROVISIONAL

      Source sequence(s)
      AC135859
      Consensus CDS
      CCDS24264.1
      UniProtKB/Swiss-Prot
      Q8BUS6, Q91WK1, Q9D651
      Related
      ENSMUSP00000054731.9, ENSMUST00000061995.10
      Conserved Domains (1) summary
      cl02614
      Location:32200
      SPRY; SPRY domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      128045777..128047663 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)