U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Scgb2a2 secretoglobin, family 2A, member 2 [ Mus musculus (house mouse) ]

    Gene ID: 102639117, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Scgb2a2provided by MGI
    Official Full Name
    secretoglobin, family 2A, member 2provided by MGI
    Primary source
    MGI:MGI:3780828
    See related
    Ensembl:ENSMUSG00000096872 AllianceGenome:MGI:3780828
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    100040203
    Summary
    Predicted to be involved in androgen receptor signaling pathway. Predicted to be active in extracellular space. Orthologous to several human genes including SCGB2A2 (secretoglobin family 2A member 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Scgb2a2 in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (9824922..9829564)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (9847558..9852200)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene proliferating cell nuclear antigen pseudogene 2 Neighboring gene STARR-seq mESC enhancer starr_45520 Neighboring gene STARR-seq mESC enhancer starr_45521 Neighboring gene STARR-seq mESC enhancer starr_45522 Neighboring gene STARR-seq mESC enhancer starr_45523 Neighboring gene STARR-seq mESC enhancer starr_45524 Neighboring gene syntaxin-binding protein 3, pseudogene Neighboring gene STARR-seq mESC enhancer starr_45526 Neighboring gene STARR-seq mESC enhancer starr_45527 Neighboring gene STARR-seq mESC enhancer starr_45528 Neighboring gene STARR-seq mESC enhancer starr_45529 Neighboring gene STARR-seq mESC enhancer starr_45530 Neighboring gene STARR-seq mESC enhancer starr_45531 Neighboring gene STARR-positive B cell enhancer ABC_E1972 Neighboring gene inner centromere protein Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene predicted gene, 50340

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Mammalian airborne allergens. Aalberse RC. Chem Immunol Allergy, 2014. PMID 24925404
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in androgen receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    secretoglobin, family 2A, member 2
    Names
    secretoglobin family 2A member 2-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378410.1 → NP_001365339.1  secretoglobin, family 2A, member 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AC132253
      UniProtKB/TrEMBL
      J3KMP9
      Related
      ENSMUSP00000135964.2, ENSMUST00000179814.3
      Conserved Domains (1) summary
      pfam01099
      Location:1 → 92
      Uteroglobin; Uteroglobin family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      9824922..9829564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.