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    Celf3 CUGBP, Elav-like family member 3 [ Mus musculus (house mouse) ]

    Gene ID: 78784, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Celf3provided by MGI
    Official Full Name
    CUGBP, Elav-like family member 3provided by MGI
    Primary source
    MGI:MGI:1926034
    See related
    Ensembl:ENSMUSG00000028137 AllianceGenome:MGI:1926034
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CAGH4; ERDA4; ETR-1; Tnrc4; BRUNOL1; 4930415M08Rik
    Summary
    Enables 7SK snRNA binding activity. Acts upstream of or within several processes, including flagellated sperm motility; lncRNA transcription; and nuclear body organization. Located in cytoplasm and nuclear body. Is expressed in several structures, including adrenal medulla; gut; nervous system; neural retina; and nose. Orthologous to human CELF3 (CUGBP Elav-like family member 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in whole brain E14.5 (RPKM 85.2), CNS E14 (RPKM 68.5) and 8 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Celf3 in Genome Data Viewer
    Location:
    3 F2.1; 3 40.73 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (94385581..94405822)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (94478285..94496786)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S2-like Neighboring gene STARR-positive B cell enhancer mm9_chr3:94260392-94260693 Neighboring gene mitochondrial ribosomal protein L9 Neighboring gene regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 Neighboring gene sorting nexin family member 27 Neighboring gene STARR-seq mESC enhancer starr_08351 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94386567-94386676 Neighboring gene translation machinery-associated protein 7 pseudogene Neighboring gene ribosomal protein L31, pseudogene 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Mice deficient for RNA-binding protein brunol1 show reduction of spermatogenesis but are fertile. Dev A, et al. Mol Reprod Dev, 2007 Nov. PMID 17393433
    2. Formation of nuclear bodies by the lncRNA Gomafu-associating proteins Celf3 and SF1. Ishizuka A, et al. Genes Cells, 2014 Sep. PMID 25145264, Free PMC Article
    3. Potential target genes of EMX2 include Odz/Ten-M and other gene families with implications for cortical patterning. Li H, et al. Mol Cell Neurosci, 2006 Oct. PMID 16919471
    4. Regulation of otocyst patterning by Tbx2 and Tbx3 is required for inner ear morphogenesis in the mouse. Kaiser M, et al. Development, 2021 Apr 15. PMID 33795231
    5. Insm1 promotes endocrine cell differentiation by modulating the expression of a network of genes that includes Neurog3 and Ripply3. Osipovich AB, et al. Development, 2014 Aug. PMID 25053427, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Brunol1 might be nonessential protein for mouse embryonic development and spermatogenesis.
      Title: Mice deficient for RNA-binding protein brunol1 show reduction of spermatogenesis but are fertile.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (1)  1 citation

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables 7SK snRNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables RNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables RNA binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in RNA splicing ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within flagellated sperm motility IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within lncRNA transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA splice site recognition IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within nuclear body organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of mRNA splicing, via spliceosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in positive regulation of mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of alternative mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of alternative mRNA splicing, via spliceosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nuclear body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of ribonucleoprotein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CUGBP Elav-like family member 3
    Names
    CUG-BP- and ETR-3-like factor 3
    ELAV-type RNA-binding protein 1
    RNA-binding protein BRUNOL-1
    VCUGBP, Elav-like family member 3
    bruno-like protein 1
    trinucleotide repeat containing 4
    trinucleotide repeat-containing gene 4 protein

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001289613.2 → NP_001276542.1  CUGBP Elav-like family member 3 isoform 1

      See identical proteins and their annotated locations for NP_001276542.1

      Status: VALIDATED

      Source sequence(s)
      BC057553, BY124225
      Consensus CDS
      CCDS79972.1
      UniProtKB/TrEMBL
      A0A0G2JGE2
      Related
      ENSMUSP00000143344.2, ENSMUST00000200342.5
      Conserved Domains (4) summary
      PRK12323
      Location:214 → 379
      PRK12323; DNA polymerase III subunit gamma/tau
      cd12639
      Location:405 → 483
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:94 → 174
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    2. NM_001289616.1 → NP_001276545.1  CUGBP Elav-like family member 3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AK044506, BC057553, BY089288
      Consensus CDS
      CCDS79974.1
      UniProtKB/TrEMBL
      A0A0G2JDL2, A0A0G2JGE2
      Related
      ENSMUSP00000142412.2, ENSMUST00000198316.5
      Conserved Domains (3) summary
      cd12639
      Location:300 → 378
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:20 → 385
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd12635
      Location:17 → 97
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    3. NM_001289620.1 → NP_001276549.1  CUGBP Elav-like family member 3 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC122808, AK087536, BC057553, BY089288
      Consensus CDS
      CCDS79973.1
      UniProtKB/TrEMBL
      A0A0G2JGX2
      Related
      ENSMUSP00000143733.2, ENSMUST00000197558.5
      Conserved Domains (3) summary
      cd12635
      Location:17 → 97
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:281 → 359
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cl17169
      Location:1 → 12
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. NM_001357784.1 → NP_001344713.1  CUGBP Elav-like family member 3 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC122808, BC057553
      UniProtKB/TrEMBL
      A0A0G2JGE2
      Related
      ENSMUSP00000143532.2, ENSMUST00000199775.5
      Conserved Domains (4) summary
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:94 → 174
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:377 → 455
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cl26386
      Location:214 → 351
      DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

    5. NM_001357785.1 → NP_001344714.1  CUGBP Elav-like family member 3 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC122808, BC057553
      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (3) summary
      TIGR01628
      Location:21 → 225
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:329 → 407
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:18 → 98
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    6. NM_001357786.1 → NP_001344715.1  CUGBP Elav-like family member 3 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC122808, BC057553
      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (3) summary
      cd12639
      Location:301 → 379
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:21 → 386
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd12635
      Location:18 → 98
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    7. NM_001357787.1 → NP_001344716.1  CUGBP Elav-like family member 3 isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC122808, AK019578, BC057553
      Related
      ENSMUST00000199148.5
      Conserved Domains (2) summary
      cd12639
      Location:198 → 276
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cl25887
      Location:109 → 283
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    8. NM_001379249.1 → NP_001366178.1  CUGBP Elav-like family member 3 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC122808
      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (4) summary
      PRK12323
      Location:214 → 379
      PRK12323; DNA polymerase III subunit gamma/tau
      cd12639
      Location:405 → 483
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:94 → 174
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    9. NM_001379250.1 → NP_001366179.1  CUGBP Elav-like family member 3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC122808
      UniProtKB/Swiss-Prot
      Q6PFH2, Q8CIN6
      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (4) summary
      PRK12323
      Location:213 → 350
      PRK12323; DNA polymerase III subunit gamma/tau
      cd12639
      Location:376 → 454
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:93 → 173
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    10. NM_001379251.1 → NP_001366180.1  CUGBP Elav-like family member 3 isoform 10

      Status: VALIDATED

      Source sequence(s)
      AC122808
      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (3) summary
      TIGR01628
      Location:20 → 224
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:328 → 406
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:17 → 97
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    11. NM_001379252.1 → NP_001366181.1  CUGBP Elav-like family member 3 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC122808
      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (3) summary
      TIGR01628
      Location:21 → 225
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:329 → 407
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:18 → 98
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    12. NM_001379253.1 → NP_001366182.1  CUGBP Elav-like family member 3 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC122808
      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (3) summary
      cd12639
      Location:301 → 379
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:21 → 386
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd12635
      Location:18 → 98
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    13. NM_001379254.1 → NP_001366183.1  CUGBP Elav-like family member 3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC122808
      UniProtKB/TrEMBL
      A0A0G2JDL2, A0A0G2JGE2
      Conserved Domains (3) summary
      cd12639
      Location:300 → 378
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:20 → 385
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd12635
      Location:17 → 97
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    14. NM_001379255.1 → NP_001366184.1  CUGBP Elav-like family member 3 isoform 13

      Status: VALIDATED

      Source sequence(s)
      AC122808
      Conserved Domains (3) summary
      TIGR01628
      Location:21 → 369
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:282 → 360
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:18 → 98
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    15. NM_001379256.1 → NP_001366185.1  CUGBP Elav-like family member 3 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC122808
      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (3) summary
      TIGR01628
      Location:21 → 225
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:329 → 407
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:18 → 98
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    16. NM_172434.4 → NP_766022.1  CUGBP Elav-like family member 3 isoform 2

      See identical proteins and their annotated locations for NP_766022.1

      Status: VALIDATED

      Source sequence(s)
      BC057553, BY124225
      Consensus CDS
      CCDS38536.1
      UniProtKB/Swiss-Prot
      Q6PFH2, Q8CIN6
      UniProtKB/TrEMBL
      A0A0G2JGE2
      Related
      ENSMUSP00000029784.6, ENSMUST00000029784.10
      Conserved Domains (4) summary
      PRK12323
      Location:213 → 350
      PRK12323; DNA polymerase III subunit gamma/tau
      cd12639
      Location:376 → 454
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:93 → 173
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    RNA

    1. NR_110353.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122808, AK030259, BC057553
      Related
      ENSMUST00000197699.5

    2. NR_151857.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122808, BC057553

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      94385581..94405822
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030252906.2 → XP_030108766.1  CUGBP Elav-like family member 3 isoform X8

      Conserved Domains (3) summary
      TIGR01628
      Location:7 → 201
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:305 → 383
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:1 → 74
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    2. XM_030252914.2 → XP_030108774.1  CUGBP Elav-like family member 3 isoform X10

      Conserved Domains (3) summary
      TIGR01628
      Location:21 → 341
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12635
      Location:18 → 98
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:254 → 332
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    3. XM_006502335.4 → XP_006502398.1  CUGBP Elav-like family member 3 isoform X8

      See identical proteins and their annotated locations for XP_006502398.1

      Conserved Domains (3) summary
      TIGR01628
      Location:7 → 201
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:305 → 383
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:1 → 74
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    4. XM_036163413.1 → XP_036019306.1  CUGBP Elav-like family member 3 isoform X5

      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (3) summary
      TIGR01628
      Location:21 → 225
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:329 → 407
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:18 → 98
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    5. XM_030252913.2 → XP_030108773.1  CUGBP Elav-like family member 3 isoform X9

      Conserved Domains (3) summary
      cd12639
      Location:277 → 355
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:2 → 362
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd12635
      Location:1 → 74
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    6. XM_030252907.2 → XP_030108767.1  CUGBP Elav-like family member 3 isoform X8

      Conserved Domains (3) summary
      TIGR01628
      Location:7 → 201
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:305 → 383
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:1 → 74
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    7. XM_030252912.2 → XP_030108772.1  CUGBP Elav-like family member 3 isoform X9

      Conserved Domains (3) summary
      cd12639
      Location:277 → 355
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:2 → 362
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd12635
      Location:1 → 74
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    8. XM_006502324.4 → XP_006502387.1  CUGBP Elav-like family member 3 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (5) summary
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:93 → 173
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:404 → 482
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      pfam08549
      Location:245 → 378
      SWI-SNF_Ssr4; Fungal domain of unknown function (DUF1750)
      pfam11593
      Location:147 → 307
      Med3; Mediator complex subunit 3 fungal

    9. XM_006502328.4 → XP_006502391.1  CUGBP Elav-like family member 3 isoform X4

      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (4) summary
      PRK14951
      Location:194 → 326
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:94 → 174
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:330 → 408
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    10. XM_030252905.2 → XP_030108765.1  CUGBP Elav-like family member 3 isoform X7

      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (3) summary
      TIGR01628
      Location:20 → 224
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:328 → 406
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:17 → 97
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    11. XM_036163415.1 → XP_036019308.1  CUGBP Elav-like family member 3 isoform X8

      Conserved Domains (3) summary
      TIGR01628
      Location:7 → 201
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:305 → 383
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:1 → 74
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    12. XM_036163416.1 → XP_036019309.1  CUGBP Elav-like family member 3 isoform X9

      Conserved Domains (3) summary
      cd12639
      Location:277 → 355
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:2 → 362
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd12635
      Location:1 → 74
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    13. XM_006502327.4 → XP_006502390.1  CUGBP Elav-like family member 3 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (5) summary
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:94 → 174
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:358 → 436
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01659
      Location:272 → 444
      sex-lethal; sex-lethal family splicing factor
      pfam11593
      Location:148 → 308
      Med3; Mediator complex subunit 3 fungal

    14. XM_011240284.3 → XP_011238586.1  CUGBP Elav-like family member 3 isoform X3

      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (5) summary
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:93 → 173
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:357 → 435
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01659
      Location:271 → 443
      sex-lethal; sex-lethal family splicing factor
      pfam11593
      Location:147 → 307
      Med3; Mediator complex subunit 3 fungal

    15. XM_030252904.2 → XP_030108764.1  CUGBP Elav-like family member 3 isoform X6

      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (4) summary
      PRK14951
      Location:193 → 325
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
      cd12632
      Location:2 → 88
      RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:93 → 173
      RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12639
      Location:329 → 407
      RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    16. XM_030252911.2 → XP_030108771.1  CUGBP Elav-like family member 3 isoform X9

      Conserved Domains (3) summary
      cd12639
      Location:277 → 355
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      TIGR01661
      Location:2 → 362
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      cd12635
      Location:1 → 74
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    17. XM_006502334.4 → XP_006502397.1  CUGBP Elav-like family member 3 isoform X7

      See identical proteins and their annotated locations for XP_006502397.1

      UniProtKB/TrEMBL
      A0A0G2JGE2
      Conserved Domains (3) summary
      TIGR01628
      Location:20 → 224
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12639
      Location:328 → 406
      RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
      cd12635
      Location:17 → 97
      RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

    RNA

    1. XR_004941415.1 RNA Sequence

    2. XR_003954425.2 RNA Sequence

      Related
      ENSMUST00000198796.5

    3. XR_003954426.2 RNA Sequence

    4. XR_003954424.2 RNA Sequence

    5. XR_004941414.1 RNA Sequence

    6. XR_001783779.3 RNA Sequence

    7. XR_375601.5 RNA Sequence

    8. XR_003954427.2 RNA Sequence

    9. XR_004941416.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CIN6.1 GenPept UniProtKB/Swiss-Prot:Q8CIN6

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