U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Pnma8a PNMA family member 8A [ Mus musculus (house mouse) ]

    Gene ID: 71691, updated on 27-Nov-2024

    Summary

    Official Symbol
    Pnma8aprovided by MGI
    Official Full Name
    PNMA family member 8Aprovided by MGI
    Primary source
    MGI:MGI:1918941
    See related
    Ensembl:ENSMUSG00000041141 AllianceGenome:MGI:1918941
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pnmal1; 0710005I19Rik; 4930488B01Rik
    Summary
    Is expressed in cortical plate and genitourinary system. Orthologous to human PNMA8A (PNMA family member 8A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in frontal lobe adult (RPKM 15.2), cortex adult (RPKM 13.2) and 6 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Pnma8a in Genome Data Viewer
    Location:
    7 A2; 7 9.15 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (16683325..16698532)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (16949950..16964607)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32630 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:17529805-17530006 Neighboring gene PNMA family member 8B Neighboring gene predicted gene, 25815 Neighboring gene PNMA family member 8C Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:17575492-17575675 Neighboring gene coiled-coil domain containing 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Clone Names

    • MGC54820

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    paraneoplastic antigen-like protein 8A
    Names
    PNMA-like 1
    PNMA-like protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007569.2NP_001007570.1  paraneoplastic antigen-like protein 8A

      See identical proteins and their annotated locations for NP_001007570.1

      Status: VALIDATED

      Source sequence(s)
      AC148976, AK079661, BC048228, BQ175886
      Consensus CDS
      CCDS20858.1
      UniProtKB/Swiss-Prot
      Q80VM8, Q8C533
      Related
      ENSMUSP00000040929.7, ENSMUST00000038163.8
      Conserved Domains (1) summary
      pfam14893
      Location:6360
      PNMA

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      16683325..16698532
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006540361.5XP_006540424.1  paraneoplastic antigen-like protein 8A isoform X1

      See identical proteins and their annotated locations for XP_006540424.1

      UniProtKB/Swiss-Prot
      Q80VM8, Q8C533
      Conserved Domains (1) summary
      pfam14893
      Location:6360
      PNMA