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    Gm5901 predicted gene 5901 [ Mus musculus (house mouse) ]

    Gene ID: 100503879, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gm5901provided by MGI
    Official Full Name
    predicted gene 5901provided by MGI
    Primary source
    MGI:MGI:3643909
    See related
    Ensembl:ENSMUSG00000078611 AllianceGenome:MGI:3643909
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG545989
    Summary
    Orthologous to human C11orf42 (chromosome 11 open reading frame 42). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 70.4), frontal lobe adult (RPKM 26.5) and 6 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Gm5901 in Genome Data Viewer
    Location:
    7 E3; 7 55.84 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (105024245..105027584)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (105375038..105378377)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 52 subfamily B member 2 Neighboring gene olfactory receptor family 52 subfamily W member 1 Neighboring gene FHF complex subunit HOOK interacting protein 1B Neighboring gene STARR-positive B cell enhancer ABC_E4960 Neighboring gene STARR-positive B cell enhancer ABC_E3739 Neighboring gene cyclic nucleotide gated channel alpha 4 Neighboring gene predicted gene 4972

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C11orf42 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195727.2 → NP_001182656.1  uncharacterized protein C11orf42 homolog isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes isoform (1).
      Source sequence(s)
      AC125055
      Consensus CDS
      CCDS57573.1
      UniProtKB/TrEMBL
      D3YVJ1
      Related
      ENSMUSP00000102417.3, ENSMUST00000106805.4
      Conserved Domains (1) summary
      pfam15668
      Location:1 → 328
      DUF4663; Domain of unknown function (DUF4663)

    2. NM_001329995.1 → NP_001316924.1  uncharacterized protein C11orf42 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) initiates translation at a downstream start codon compared to variant 3. The encoded isoform (2) is shorter than isoform 3.
      Source sequence(s)
      AC125055, BB615116

    3. NM_001382419.1 → NP_001369348.1  uncharacterized protein C11orf42 homolog isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) encodes the longest isoform (3)
      Source sequence(s)
      AC125055
      Conserved Domains (1) summary
      pfam15668
      Location:1 → 329
      DUF4663; Domain of unknown function (DUF4663)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      105024245..105027584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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