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    Siglecl1 Siglec family like 1 [ Mus musculus (house mouse) ]

    Gene ID: 100039946, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Siglecl1provided by MGI
    Official Full Name
    Siglec family like 1provided by MGI
    Primary source
    MGI:MGI:3780678
    See related
    Ensembl:ENSMUSG00000108695 AllianceGenome:MGI:3780678
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm2511
    Summary
    Orthologous to human SIGLECL1 (SIGLEC family like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 18.2) See more
    Orthologs
    human all
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    Genomic context

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    See Siglecl1 in Genome Data Viewer
    Location:
    7 B3; 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (43160589..43172609, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (43511165..43519079, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene Siglec family like 2 Neighboring gene predicted gene 9278 Neighboring gene CD33 molecule Neighboring gene zinc finger protein 658

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    SIGLEC family-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378448.1 → NP_001365377.1  SIGLEC family-like protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC154108
      Related
      ENSMUSP00000160090.1, ENSMUST00000206605.3
      Conserved Domains (2) summary
      cd00096
      Location:37 → 41
      Ig; Ig strand C [structural motif]
      cl11960
      Location:28 → 92
      Ig; Immunoglobulin domain

    2. NM_001378449.1 → NP_001365378.1  SIGLEC family-like protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC154108
      Conserved Domains (2) summary
      cd00096
      Location:37 → 41
      Ig; Ig strand C [structural motif]
      cl11960
      Location:28 → 92
      Ig; Immunoglobulin domain

    3. NM_001378450.1 → NP_001365379.1  SIGLEC family-like protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC154108
      Related
      ENSMUSP00000160089.1, ENSMUST00000205521.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      43160589..43172609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036152483.1 → XP_036008376.1  SIGLEC family-like protein 1 isoform X1

      Conserved Domains (2) summary
      cd00096
      Location:37 → 41
      Ig; Ig strand C [structural motif]
      cl11960
      Location:28 → 92
      Ig; Immunoglobulin domain

    2. XM_006541334.3 → XP_006541397.1  SIGLEC family-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006541397.1

      Conserved Domains (2) summary
      cd00096
      Location:37 → 41
      Ig; Ig strand C [structural motif]
      cl11960
      Location:28 → 92
      Ig; Immunoglobulin domain

    3. XM_030243164.1 → XP_030099024.1  SIGLEC family-like protein 1 isoform X5

    4. XM_006541337.1 → XP_006541400.1  SIGLEC family-like protein 1 isoform X3

      Conserved Domains (1) summary
      cl11960
      Location:28 → 92
      Ig; Immunoglobulin domain

    5. XM_006541333.1 → XP_006541396.1  SIGLEC family-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006541396.1

      Related
      ENSMUSP00000160087.1, ENSMUST00000250004.1
      Conserved Domains (2) summary
      cd00096
      Location:37 → 41
      Ig; Ig strand C [structural motif]
      cl11960
      Location:28 → 92
      Ig; Immunoglobulin domain

    6. XM_030243165.1 → XP_030099025.1  SIGLEC family-like protein 1 isoform X6

    7. XM_036152484.1 → XP_036008377.1  SIGLEC family-like protein 1 isoform X7

    8. XM_006541336.1 → XP_006541399.1  SIGLEC family-like protein 1 isoform X2

      Conserved Domains (1) summary
      cl11960
      Location:28 → 92
      Ig; Immunoglobulin domain

    9. XM_011250937.1 → XP_011249239.1  SIGLEC family-like protein 1 isoform X4

      Conserved Domains (1) summary
      cl11960
      Location:28 → 92
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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