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    Tcp11l1 t-complex 11 like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499846, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tcp11l1provided by RGD
    Official Full Name
    t-complex 11 like 1provided by RGD
    Primary source
    RGD:1562313
    See related
    EnsemblRapid:ENSRNOG00000042576 AllianceGenome:RGD:1562313
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562313
    Summary
    Predicted to be involved in signal transduction. Predicted to be located in microtubule. Orthologous to human TCP11L1 (t-complex 11 like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 92.6), Kidney (RPKM 62.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tcp11l1 in Genome Data Viewer
    Location:
    3q32
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (111478787..111547553, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (91047006..91092687, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (94621433..94657467, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene homeodomain interacting protein kinase 3 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene cleavage stimulation factor subunit 3 Neighboring gene uncharacterized LOC134486132 Neighboring gene DEP domain containing 7 Neighboring gene glutamine and serine rich 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. PEX14 is required for microtubule-based peroxisome motility in human cells. Bharti P, et al. J Cell Sci, 2011 May 15. PMID 21525035
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in microtubule ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    T-complex protein 11-like protein 1
    Names
    t-complex 11, testis-specific-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109202.1 → NP_001102672.1  T-complex protein 11-like protein 1

      See identical proteins and their annotated locations for NP_001102672.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473949
      UniProtKB/TrEMBL
      A0A0G2K6F1, A6HNU7, F1M9Y7
      Related
      ENSRNOP00000073788.2, ENSRNOT00000077484.3
      Conserved Domains (1) summary
      pfam05794
      Location:78 → 502
      Tcp11; T-complex protein 11

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      111478787..111547553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063284359.1 → XP_063140429.1  T-complex protein 11-like protein 1 isoform X2

      UniProtKB/TrEMBL
      F1M9Y7
      Related
      ENSRNOP00000101296.1, ENSRNOT00000158084.1

    2. XM_039105674.2 → XP_038961602.1  T-complex protein 11-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K6F1, A6HNU7, F1M9Y7
      Conserved Domains (1) summary
      pfam05794
      Location:78 → 502
      Tcp11; T-complex protein 11

    3. XM_017591977.3 → XP_017447466.2  T-complex protein 11-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K6F1, A6HNU7, F1M9Y7
      Conserved Domains (1) summary
      pfam05794
      Location:78 → 502
      Tcp11; T-complex protein 11
    Nucleotide Protein Strain
    Heading Accession and Version

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