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    Tex9 testis expressed 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300822, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tex9provided by RGD
    Official Full Name
    testis expressed 9provided by RGD
    Primary source
    RGD:1304772
    See related
    EnsemblRapid:ENSRNOG00000059702 AllianceGenome:RGD:1304772
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in centriolar satellite. Orthologous to human TEX9 (testis expressed 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 80.2), Kidney (RPKM 68.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tex9 in Genome Data Viewer
    Location:
    8q24
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (82049194..82094613, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (73168519..73213935, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (79083449..79119621, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546620 Neighboring gene zinc finger protein 280D Neighboring gene ribosomal protein L35, pseudogene 6 Neighboring gene meiosis-specific nuclear structural 1 Neighboring gene uncharacterized LOC103693140 Neighboring gene cyclin D3, pseudogene 1 Neighboring gene regulatory factor X, 7 Neighboring gene NEDD4 E3 ubiquitin protein ligase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in centriolar satellite ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed protein 9
    Names
    testis expressed gene 9
    testis-expressed sequence 9 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399268.1 → NP_001386197.1  testis-expressed protein 9

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A0A8I6A9G7
      Related
      ENSRNOP00000073604.1, ENSRNOT00000086562.3
      Conserved Domains (1) summary
      COG1196
      Location:188 → 384
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      82049194..82094613 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039082505.2 → XP_038938433.1  testis-expressed protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K5Y3, A6KEN7
      Conserved Domains (1) summary
      COG1196
      Location:231 → 427
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_006243344.5 → XP_006243406.1  testis-expressed protein 9 isoform X2

      See identical proteins and their annotated locations for XP_006243406.1

      Conserved Domains (1) summary
      cl23887
      Location:249 → 341
      DUF4349; Domain of unknown function (DUF4349)

    3. XM_063265172.1 → XP_063121242.1  testis-expressed protein 9 isoform X7

      UniProtKB/TrEMBL
      A6KEP0, A6KEP1

    4. XM_063265175.1 → XP_063121245.1  testis-expressed protein 9 isoform X7

      UniProtKB/TrEMBL
      A6KEP0, A6KEP1

    5. XM_063265174.1 → XP_063121244.1  testis-expressed protein 9 isoform X7

      UniProtKB/TrEMBL
      A6KEP0, A6KEP1

    6. XM_063265173.1 → XP_063121243.1  testis-expressed protein 9 isoform X7

      UniProtKB/TrEMBL
      A6KEP0, A6KEP1

    7. XM_039082509.2 → XP_038938437.1  testis-expressed protein 9 isoform X6

      Conserved Domains (1) summary
      COG1196
      Location:18 → 199
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    8. XM_039082508.2 → XP_038938436.1  testis-expressed protein 9 isoform X5

    9. XM_039082507.2 → XP_038938435.1  testis-expressed protein 9 isoform X4

    10. XM_039082506.2 → XP_038938434.1  testis-expressed protein 9 isoform X3

    RNA

    1. XR_005488302.2 RNA Sequence

    2. XR_005488301.2 RNA Sequence

    3. XR_005488300.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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