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    F52D10.2 PID domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181347, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F52D10.2
    Official Full Name
    PID domain-containing protein
    Primary source
    WormBase:WBGene00009930
    Locus tag
    CELE_F52D10.2
    See related
    AllianceGenome:WB:WBGene00009930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in several structures, including intestinal muscle; pharyngeal-intestinal valve; pharynx; reproductive system; and tail. Orthologous to several human genes including FAM43B (family with sequence similarity 43 member B). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F52D10.2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    6
    Sequence:
    Chromosome: X; NC_003284.9 (11589686..11591720, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene FERM domain-containing protein;FYVE, RhoGEF and PH domain-containing protein 6;Moesin/ezrin/radixin homolog 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Bicarbonate transporter-like transmembrane domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics. Chen JX, et al. Mol Cell Proteomics, 2016 May. PMID 26912668, Free PMC Article
    2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    PID domain-containing protein
    NP_509937.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      11589686..11591720 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_077536.6 → NP_509937.1  PID domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509937.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20652
      Conserved Domains (1) summary
      pfam14719
      Location:34 → 208
      PID_2; Phosphotyrosine interaction domain (PTB/PID)
    Nucleotide Protein
    Heading Accession and Version

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