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    lmd-1 LysM domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 185715, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lmd-1
    Official Full Name
    LysM domain-containing protein
    Primary source
    WormBase:WBGene00009665
    Locus tag
    CELE_F43G9.2
    See related
    AllianceGenome:WB:WBGene00009665
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Orthologous to several human genes including LYSMD4 (LysM domain containing 4). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lmd-1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (8609921..8611066)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Vesicle transport protein Neighboring gene putative isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial Neighboring gene ncRNA Neighboring gene PWWP domain-containing protein Neighboring gene Mitochondrial coenzyme A transporter SLC25A42 Neighboring gene Cleavage and polyadenylation specificity factor subunit 5 Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis. Xiao L, et al. Cell Syst, 2022 Aug 17. PMID 35882226
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    LysM domain-containing protein
    NP_001122475.1
    • Confirmed by transcript evidence
    NP_001122476.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      8609921..8611066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001129004.3 → NP_001122476.1  LysM domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122476.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A5JYU7
      Conserved Domains (1) summary
      smart00257
      Location:43 → 84
      LysM; Lysin motif

    2. NM_001129003.3 → NP_001122475.1  LysM domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001122475.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A5JYU6
      Conserved Domains (1) summary
      smart00257
      Location:43 → 84
      LysM; Lysin motif
    Nucleotide Protein
    Heading Accession and Version

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