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    W02G9.3 THUMP domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178732, updated on 9-Dec-2024

    Summary

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    Official Symbol
    W02G9.3
    Official Full Name
    THUMP domain-containing protein
    Primary source
    WormBase:WBGene00020953
    Locus tag
    CELE_W02G9.3
    See related
    AllianceGenome:WB:WBGene00020953
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in tRNA modification. Orthologous to human THUMPD1 (THUMP domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See W02G9.3 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (2672986..2674167)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Putative nudix hydrolase 2 Neighboring gene tRNA-Thr Neighboring gene ncRNA Neighboring gene CUB domain-containing protein Neighboring gene BACK domain-containing protein;BTB domain-containing protein;Kelch-like protein 8 Neighboring gene tRNA-Thr Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene L-2-hydroxyglutarate dehydrogenase, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA modification IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in tRNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    THUMP domain-containing protein
    NP_503728.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      2672986..2674167
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071327.4 → NP_503728.2  THUMP domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O61900
      Conserved Domains (1) summary
      cd11717
      Location:109 → 249
      THUMP_THUMPD1_like; THUMP domain-containing protein 1-like
    Nucleotide Protein
    Heading Accession and Version

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