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    pals-22 Retrotrans_gag domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175180, updated on 9-Dec-2024

    Summary

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    Official Symbol
    pals-22
    Official Full Name
    Retrotrans_gag domain-containing protein
    Primary source
    WormBase:WBGene00016216
    Locus tag
    CELE_C29F9.1
    See related
    AllianceGenome:WB:WBGene00016216
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in several structures, including hypodermis; intestine; nervous system; and pharynx. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See pals-22 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_003281.10 (132418..134401)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Nuclear Hormone Receptor family Neighboring gene Uncharacterized protein Neighboring gene Protein containing ALS2cr12 (ALS2CR12) signature Neighboring gene F-box associated domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans. Reddy KC, et al. PLoS Pathog, 2019 Jan. PMID 30640956, Free PMC Article
    2. An Intracellular Pathogen Response Pathway Promotes Proteostasis in C. elegans. Reddy KC, et al. Curr Biol, 2017 Nov 20. PMID 29103937, Free PMC Article
    3. Silencing of Repetitive DNA Is Controlled by a Member of an Unusual Caenorhabditis elegans Gene Family. Leyva-Díaz E, et al. Genetics, 2017 Oct. PMID 28801529, Free PMC Article
    4. Balancing Selection of the Intracellular Pathogen Response in Natural Caenorhabditis elegans Populations. van Sluijs L, et al. Front Cell Infect Microbiol, 2021. PMID 35174100, Free PMC Article
    5. A pals-25 gain-of-function allele triggers systemic resistance against natural pathogens of C. elegans. Gang SS, et al. PLoS Genet, 2022 Oct. PMID 36191002, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    General protein information

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    Preferred Names
    Retrotrans_gag domain-containing protein
    NP_497152.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      132418..134401
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064751.4 → NP_497152.1  Retrotrans_gag domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497152.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9TZB2
    Nucleotide Protein
    Heading Accession and Version

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